TRANSIT
Revision as of 17:51, 8 July 2019 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|transit}} |{{#vardefine:url|https://github.com/mad-lab/transit}} <!--CONFIGU...")
Description
TRANSIT is a tool for processing and statistical analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.
Environment Modules
Run module spider transit
to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:transit}}_DIR - installation directory
- HPC_{{#uppercase:transit}}_BIN - executable directory