Necklace
Revision as of 16:45, 31 May 2018 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|necklace}} |{{#vardefine:url|https://github.com/Oshlack/...")
Description
In species where the reference genome or annotation is incomplete, RNA-Seq analyses can benefit from performing a genome-guided and de novo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcriptomes with reference genome annotations. Necklace constructs a compact but comprehensive superTranscriptome
Environment Modules
Run module spider necklace to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:necklace}}_DIR - installation directory
- HPC_{{#uppercase:necklace}}_BIN - executable directory
- HPC_{{#uppercase:necklace}}_CONF - installation directory
Additional Information
Make sure to use * HPC_{{#uppercase:necklace}}_CONF to point the software to the necklace.groovy file.