Description

iGTP website

iGTP is a program designed to help biologists infer species phylogenies from gene phylogenies, using the gene tree parsimony (GTP) approach. The program implements efficient heuristics which allows it to handle large-scale species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs.

iGTP provides the following features:

* Allowing unrooted input gene trees
* Providing three-dimensional tree visualization
* Computing reconciliation costs

Required Modules

Serial

iGTP

System Variables

HPC_{{#uppercase:iGTP}}_DIR
HPC_{{#uppercase:iGTP}}_BIN

Citation

If you publish research that uses iGTP you have to cite it as follows: Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein, "iGTP: A software package for large-scale gene tree parsimony analysis", BMC Bioinformatics 2010, 11:574.

Validation

Validated 4/5/2018

IGTP