MAFFT
Revision as of 20:38, 23 February 2018 by Moskalenko (talk | contribs) (Moskalenko moved page Mafft to MAFFT: Sync with the naming in modules)
Description
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.
Required Modules
Serial
- mafft
System Variables
- HPC_{{#uppercase:mafft}}_DIR - installation directory
Additional Information
MAFFT is compiled to run on multiple cores, use the --thread <cores> option to specify the number of cores to use. Make sure that this number corresponds to the resources requested in your #PBS -l nodes=1:ppn=<cores> statement.