IDBA-MT
Revision as of 19:37, 23 February 2018 by Moskalenko (talk | contribs)
Description
IDBA-MT is an iterative De Bruijn Graph De Novo short read assembler for meta-transcriptome. It is purely de novo assembler based on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig length using paired-end reads information.
IDBA-MTP is an optional pre-processing software for IDBA-MT. It generates candidate contigs by aligning reference protein sequences to de Bruijn graph. Please run IDBA-UD and IDBA-MT after running IDBA-MTP to get confident result.
Environment Modules
Run module spider idba-mt to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:idba-mt}}_DIR - installation directory