TGICL
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Description
TGI Clustering tools (TGICL): a software system for fast clustering of large EST datasets
This package automates clustering and assembly of a large EST/mRNA dataset. The clustering is performed by a slightly modified version of NCBI's megablast , and the resulting clusters are then assembled using CAP3 assembly program. TGICL starts with a large multi-FASTA file (and an optional peer quality values file) and outputs the assembly files as produced by CAP3
Required Modules
Serial
- tgicl
System Variables
- HPC_{{#uppercase:tgicl}}_DIR - installation directory
- HPC_TGICL_BIN - executable directory
- HPC_TGICL_CONF - conf directory
Additional Information
- To copy the default skeleton configuration file to the working directory:
cp $HPC_TGICL_CONF/tgicl.cfg .
- Sample run
launch_tgicl tgicl -F sample.fasta -q sample.qual -c 4