Popoolation
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Description
PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation allows to calculate Tajima’s Pi, Watterson’s Theta and Tajima’s D with a sliding window approach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We believe that PoPoolation will greatly aid this task by allowing a fast and user friendly analysis of NGS data from DNA pools.
Environment Modules
Run module spider popoolation to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:popoolation}}_DIR - installation directory
- HPC_{{#uppercase:popoolation}}_BIN - executable directory