ABySS
Revision as of 19:07, 21 September 2017 by Moskalenko (talk | contribs) (Moskalenko moved page Abyss to ABySS)
Description
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
Required Modules
Serial
- abyss
Parallel (MPI)
- intel/2016.0.109
- openmpi/1.10.2
- abyss/1.9.0
System Variables
- HPC_{{#uppercase:abyss}}_DIR - installation directory