Roary

Description

roary website  

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.

Required Modules

Serial

• roary

System Variables

• HPC_{{#uppercase:roary}}_DIR - installation directory

Citation

If you publish research that uses roary you have to cite it as follows:

Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill (2015), "Roary: Rapid large-scale prokaryote pan genome analysis", Bioinformatics