Auto3DEM

Description

auto3dem website  

Auto3DEM is a semi-automated image reconstruction system that provides all the tools to process raw micrographs acquired at an electron microscope and generate a three-dimensional reconstruction. The most intensive computational procedure like orientation search and reconstruction can be executed either in serial or in parallel on a computer cluster.

Required Modules

Serial

• auto3dem

Parallel (OpenMP)

• intel
• auto3dem

Parallel (MPI)

• intel
• openmpi
• auto3dem

System Variables

• HPC_{{#uppercase:auto3dem}}_DIR - installation directory