SNeP
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Description
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data
Required Modules
Serial
- snep
System Variables
- HPC_{{#uppercase:snep}}_DIR - installation directory
Citation
If you publish research that uses snep you have to cite it as follows:
Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109