HapCompass
Revision as of 15:19, 19 December 2014 by Moskalenko (talk | contribs)
Description
HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph where SNPs are nodes and edges are defined by the sequencing reads and viewed as supporting evidence of co-occuring SNP alleles in a haplotype.
Required Modules
Serial
- hapcompass
System Variables
- HPC_{{#uppercase:hapcompass}}_DIR - installation directory
- HPC_{{#uppercase:hapcompass}}_DOC - documentation directory
- HPC_{{#uppercase:hapcompass}}_EXE - examples directory