Mauve

Description

mauve website  

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Required Modules

Serial

• mauve

System Variables

• HPC_{{#uppercase:mauve}}_DIR

Additional Information

See using mauve from the command-line on how to use Mauve at the command line. You can also briefly run the main Gui by logging into the gui.hpc.ufl.edu server. See GUI_Programs for details.