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• Spyder
  ...he data exploration, interactive execution, deep inspection, and beautiful visualization capabilities of a scientific package.
  3 KB (350 words) - 18:56, 21 August 2022
• PosiGene
  ...branches, (iii) can be used in arbitrary species contexts and (iv) offers visualization of the candidates. As data input the program requires only the coding seque
  3 KB (358 words) - 21:22, 6 December 2019
• READemption
  ...xpression quantification, differential gene expression analysis as well as visualization. In order to set up and perform analyses quickly READemption follows the pr
  3 KB (352 words) - 17:58, 1 June 2022
• PanX
  panX is a software package for pan-genome analysis, interactive visualization and exploration. The analysis pipeline is based on DIAMOND (Buchfink et al.
  3 KB (346 words) - 21:22, 6 December 2019
• Slicer
  Slicer or 3D Slicer is a free, open-source software for visualization, processing, segmentation, registration, and analysis of medical, biomedica
  3 KB (346 words) - 15:42, 8 April 2024
• Jutils
  Jutils is a visualization toolkit for alternative splicing events. It uses an intermediate tab separa
  3 KB (345 words) - 13:30, 15 August 2022
• Mvftools
  ...on utilities, filtering and transformation programs, and data analysis and visualization modules. MVF format is designed specifically for biological data analysis,
  3 KB (370 words) - 13:58, 30 April 2020
• BiG-SCAPE
  ...ut, BiG-SCAPE generates tab-delimited output files, as well as a rich HTML visualization that includes multi-locus phylogenies of each Gene Cluster Family made usin
  3 KB (377 words) - 12:53, 15 August 2022
• AtomEye
  AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed gra
  3 KB (351 words) - 15:21, 12 August 2022
• TASSEL
  ...pal component analysis, cluster analysis, missing data imputation and data visualization.  TASSEL development has been led by a group focused on maize genetics and
  3 KB (386 words) - 16:13, 22 August 2022
• MetaWRAP
  ...metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional an
  3 KB (412 words) - 22:31, 8 September 2020
• MZMine
  MZmine 2 is an open-source framework for processing, visualization and analysis of mass spectrometry based molecular profile data. It is based
  3 KB (417 words) - 13:28, 7 July 2023
• GenomicTools
  ...he GenomicTools platform supports the widely used BED format to facilitate visualization as well as integration with existing platforms and pipelines such as Galaxy
  3 KB (385 words) - 18:58, 12 August 2022
• ParaView
  ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze the
  3 KB (416 words) - 21:28, 13 October 2023
• RSEM
  ...ior mean and 95% credibility interval estimates for expression levels. For visualization, It can generate BAM and Wiggle files in both transcript-coordinate and gen
  3 KB (390 words) - 21:59, 21 August 2022
• Geant4
  ...n: geometry, tracking, detector response, run, event and track management, visualization and user interface. The multi-disciplinary nature of the toolkit requires t
  3 KB (416 words) - 19:34, 30 November 2022
• AltAnalyze
  ...ction analysis (protein, domain and microRNA targeting). Multiple advanced visualization tools and à la carte analysis methods are supported in AltAnalyze (e.g., n
  3 KB (398 words) - 19:14, 10 June 2022
• IMOD
  ...mod/paper/ Kremer J.R., D.N. Mastronarde and J.R. McIntosh (1996) Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116:71-76.]
  3 KB (414 words) - 14:42, 14 December 2022
• ZEO++
  *File format conversion and visualization aids
  3 KB (424 words) - 19:47, 27 May 2022
• QIIME2
  ...esentative sequences of OTUs, and through downstream statistical analysis, visualization, and production of publication-quality graphics. QIIME has been applied to
  3 KB (435 words) - 15:15, 19 August 2022

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