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• SAMStat
  ...ing biases in next generation sequencing data." Bioinformatics doi:10.1093/bioinformatics/btq614 [PMID: 21088025]
  3 KB (429 words) - 20:34, 12 August 2022
• Gmap
  Bioinformatics 2005 21:1859-1875 Bioinformatics 2010 26:873-881
  3 KB (450 words) - 17:11, 15 August 2022
• MetaBCC-LR
  @article{10.1093/bioinformatics/btaa441, journal = {Bioinformatics},
  6 KB (774 words) - 14:28, 15 December 2022
• Ngstools
  ...generation sequencing data.Fumagalli M, Vieira FG, Linderoth T, Nielsen R. Bioinformatics. 2014 May 15;30(10):1486-7 ...t Generation Sequencing Data. Korneliussen T, Albrechtsen A, Nielsen R BMC Bioinformatics. 2014 Nov 25;15(1):356
  5 KB (708 words) - 15:31, 14 December 2022
• Fast-Plast
  ...Usadel. 2014. Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics, btu170. ...ck-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics, 27:764-770.
  4 KB (487 words) - 21:20, 6 December 2019
• Scalpel
  Bioinformatics pipeline for discovery of genetic variants from NGS reads.
  2 KB (239 words) - 22:07, 21 August 2022
• Staphb-toolkit
  The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action.
  2 KB (248 words) - 19:54, 2 June 2022
• Hyb
  Hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hy
  2 KB (247 words) - 15:07, 10 June 2022
• PacBio
  SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DNA sequencing data
  2 KB (250 words) - 20:10, 24 August 2022
• Krona
  Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
  2 KB (254 words) - 19:29, 12 August 2022
• Orthograph
  ...ral.com/articles/10.1186/s12859-017-1529-8 Orthograph was published in BMC Bioinformatics (2017).]
  2 KB (261 words) - 18:00, 19 August 2022
• HALC
  The HALC paper is accepted for publication in BMC Bioinformatics!
  2 KB (265 words) - 21:20, 6 December 2019
• FLEA
  FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosci
  2 KB (260 words) - 22:01, 27 August 2020
• Nextclade
  Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018)
  2 KB (260 words) - 19:03, 12 January 2023
• GeneSeqer
  ...sensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics 20, 1157-1169.
  2 KB (257 words) - 18:58, 12 August 2022
• Nanolyse
  ...ume 34, Issue 15, 01 August 2018, Pages 2666–2669, https://doi.org/10.1093/bioinformatics/bty149
  2 KB (260 words) - 19:24, 7 September 2022
• JCVI
  Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparat
  2 KB (265 words) - 14:30, 4 September 2020
• GenomeTools
  The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary na
  2 KB (266 words) - 18:58, 12 August 2022
• TrimAl
  ...009.pdf Salvador Capella-Gutierrez; Jose M. Silla-Martinez; Toni Gabaldon. Bioinformatics 2009 25: 1972-1973.]
  2 KB (264 words) - 19:32, 24 August 2022
• VEP
  McLaren et. al. (doi:10.1093/bioinformatics/btq330)
  2 KB (270 words) - 17:28, 22 August 2022

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