Search results

• Talon
  ...hua Zeng, Brian Williams, Diane Trout, Whitney England, Sophie Chu, Robert C. Spitale, Andrea J. Tenner, Barbara J. Wold, Ali Mortazavi bioRxiv 672931;
  3 KB (321 words) - 15:13, 23 September 2022
• SNPhylo
  Lee, T. H., Guo, H., Wang, X., Kim, C., & Paterson, A. H. (2014). SNPhylo: a pipeline to construct a phylogenetic
  3 KB (340 words) - 17:48, 10 June 2022
• ElPrep
  .../journals.plos.org/plosone/article?id=10.1371/journal.pone.0209523 Herzeel C, Costanza P, Decap D, Fostier J, Verachtert W (2019) elPrep 4: A multithrea
  3 KB (345 words) - 21:20, 6 December 2019
• SpliceGrapher
  * M. F. Rogers, C. Boucher, A. Ben-Hur. SpliceGrapherXT: from splice graphs to transcripts us
  3 KB (318 words) - 21:24, 6 December 2019
• GeNomad
  ...chal Babinski, Yan Xu, Bin Hu, Patrick S. G. Chain, Stephen Nayfach, Nikos C. Kyrpides bioRxiv 2023.03.05.531206; doi: https://doi.org/10.1101/2023.03.0
  3 KB (332 words) - 13:25, 7 April 2023
• MGLTools
  components implemented in Python and C++ (With Python bindings).
  3 KB (357 words) - 17:03, 6 June 2022
• DeepGS
  ...5-018-2976-9 Ma, W., Qiu, Z., Song, J., Li, J., Cheng, Q., Zhai, J., & Ma, C. (2018). A deep convolutional neural network approach for predicting phenot
  3 KB (342 words) - 22:21, 26 August 2020
• Hiphase
  [https://doi.org/10.1093/bioinformatics/btae042 Holt, J. M., Saunders, C. T., Rowell, W. J., Kronenberg, Z., Wenger, A. M., & Eberle, M. (2024). HiP
  3 KB (337 words) - 20:21, 19 March 2024
• Probalign
  ...CH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequ
  3 KB (349 words) - 19:36, 21 August 2022
• Uropa
  Kondili M, Fust A, Preussner J, Kuenne C, Braun T, and Looso M. UROPA: a tool for Universal RObust Peak Annotation.
  3 KB (337 words) - 15:42, 6 September 2022
• Imoka
  Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze
  3 KB (346 words) - 17:07, 27 May 2022
• SNP-sites
  ...making it feasible to run on modest computers. SNP-sites is implemented in C and is available under the open source license GNU GPL version 3.
  3 KB (334 words) - 12:56, 15 August 2022
• SEQuel
  sequel -c sample.fasta -ap reads_aln.sam -i 404
  3 KB (382 words) - 22:39, 21 August 2022
• Numba
  ...ing NumPy arrays. Other, less well-typed code will be translated to Python C-API calls effectively removing the "interpreter" but not removing the dynam
  3 KB (353 words) - 20:44, 15 August 2022
• HybPiper
  ...dner, E. M., Liu, Y., Medina, R., Goffinet, B., Shaw, A. J., Zerega, N. J. C, and Wickett, N. J. (2016). HybPiper: Extracting Coding Sequence and Intron
  3 KB (349 words) - 18:36, 10 June 2022
• UCSC
  ...much more. Library subroutines are available for everything from managing C data structures such as linked lists, balanced trees, hashes, and directed
  3 KB (349 words) - 20:53, 12 August 2022
• Nipype
  Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. (2011). Nipype: a flexible, li
  3 KB (348 words) - 20:07, 12 August 2022
• Sdsl
  The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library co
  3 KB (350 words) - 17:47, 15 August 2022
• Theano
  * dynamic C code generation – Evaluate expressions faster.
  3 KB (345 words) - 15:58, 6 June 2022
• Humann2
  ...gart G, Schwarzberg Lipson K, Knight R, Caporaso JG, Segata N, Huttenhower C. Species-level functional profiling of metagenomes and metatranscriptomes.
  3 KB (348 words) - 22:26, 27 August 2020

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