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• Ms-dial
  ...ndors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Common data formats such as netCDF (AIA) and mzML, can also be managed in our project. * spectral deconvolution for both GC/MS and data-independent MS/MS,
  3 KB (385 words) - 13:32, 19 August 2022
• SMR
  Summary-data-based Mendelian Randomization ...Zhu et al. 2016 Nature Genetics). The methodology can be interpreted as an analysis to test if the effect size of a SNP on the phenotype is mediated by gene ex
  3 KB (362 words) - 18:27, 19 August 2021
• Computer Vision
  ...': Matlab provides rich libraries of image processing techniques for image analysis. ...AI to the task at hand by continuously learning from user interactions and data.
  4 KB (563 words) - 20:59, 21 December 2022
• PyBSASeq
  A novel algorithm for BSA-Seq data analysis
  2 KB (235 words) - 17:14, 1 June 2022
• GATK
  ...at makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical ...roblems (like SNP calling) as well as enabling exploratory research on NGS data.
  4 KB (540 words) - 16:53, 15 August 2022
• Uproc
  ...implements a novel algorithm ("Mosaic Matching") for large-scale sequence analysis and is now available in terms of an open source C library. UProC is up to t
  3 KB (418 words) - 20:53, 12 August 2022
• Talon
  ...ON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. Dana Wyman, Gabrie
  3 KB (321 words) - 15:13, 23 September 2022
• Anvio
  Anvio is an analysis and visualization platform for ‘omics data.
  2 KB (237 words) - 14:20, 12 August 2022
• DiffReps
  ...s a highly sensitive program in detecting differential sites from ChIP-seq data. ...iffReps: Detecting Differential Chromatin Modification Sites from ChIP-seq Data with Biological Replicates. PLoS ONE 8(6): e65598. [http://www.plosone.org/
  4 KB (474 words) - 14:41, 15 August 2022
• VarScan
  ...at the Genome Institute at Washington University to detect variants in NGS data.
  3 KB (324 words) - 20:54, 12 August 2022
• Ipyrad
  ...e toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studie
  2 KB (239 words) - 19:00, 15 August 2022
• Phyluce
  ...loo-chee) is a software package that was initially developed for analyzing data collected from ultraconserved elements in organismal genomes. * The assembly of raw read data to contigs
  4 KB (517 words) - 18:23, 21 August 2022
• RNAstructure
  prediction and analysis. It includes algorithms for secondary structure can take a number of different types of experiment mapping data to
  3 KB (359 words) - 21:58, 21 August 2022
• Spyder
  ..., and profiling functionality of a comprehensive development tool with the data exploration, interactive execution, deep inspection, and beautiful visualiz
  3 KB (350 words) - 18:56, 21 August 2022
• GASVPro
  ...e for identifying and structural variants (SVs) from paired-end sequencing data.
  2 KB (248 words) - 18:57, 12 August 2022
• Hyb
  ...e for analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.
  2 KB (247 words) - 15:07, 10 June 2022
• PacBio
  ...ics software suite for analyzing single molecule, real-time DNA sequencing data.
  2 KB (250 words) - 20:10, 24 August 2022
• PosiGene
  ...rence of false positives. PosiGene was tested on simulated as well as real data to ensure the reliability of the predicted positively selected genes.
  3 KB (358 words) - 21:22, 6 December 2019
• READemption
  ...calculation, gene expression quantification, differential gene expression analysis as well as visualization. In order to set up and perform analyses quickly R
  3 KB (352 words) - 17:58, 1 June 2022
• Trinotate
  ...OG/GO Pathways databases). All functional annotation data derived from the analysis of transcripts is integrated into a SQLite database which allows fast effic
  3 KB (344 words) - 20:29, 7 December 2023

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