Newbler

Description

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Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company. Template:App Location

Available versions

• 2.6

Running the application using modules

To use newbler with the environment modules system at HPC the following commands are available:

Get module information for newbler:

$module spider newbler

Load the default application module:

$module load newbler

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_NEWBLER_DIR - directory where newbler is located.
• HPC_NEWBLER_BIN - executable directory