Bismark
Revision as of 04:26, 29 June 2012 by Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:GenomicsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bismark}} |{{#vardefine:url|http://www.bi...")
Description
{{{name}}} website
Bismark is a bisulfite read mapper and methylation caller.
Template:App Location
Available versions
- 0.7.4 (EL6)
Running the application using modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.