BFAST

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Description

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BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

Template:App Location

Available versions

  • 0.7.0a

Running the application using modules

To use bfast with the environment modules system at HPC the following commands are available:

Get module information for bfast: 

$module spider bfast

Load the default application module: 

$module load bfast

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_BFAST_DIR - directory where bfast is located.
  • HPC_BFAST_BIN - executable directory
  • HPC_BFAST_DOC - documentation directory




Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=BFAST&oldid=5553"