Fungani
Description
FUNGANI: A BLAST-based program for analyzing Average Nucleotide Identity (ANI) between two fungal genomes, enables easy fungal species delimitation.
Environment Modules
Run module spider fungani to find out what environment modules are available for this application.
System Variables
- HPC_FUNGANI_DIR - installation directory
- HPC_FUNGANI_BIN - executable directory
- FUNGANI_DIR - github directory
Additional Information
Executables need to be run from the root of the github repository. Either copy $FUNGANI_DIR or clone from github, and cd into personal 'fungani' folder:
$ module load fungani/0.1.0 $ cp -r $FUNGANI_DIR /path/to/myfungani $ cd /path/to/myfungani
Command line executable
$ python -m fungani.cli -h usage: fungani [-h] [-t THRESHOLD] [-p PERCENT] [-w SIZE] [-g OVERLAP] [-j CPUS] [-o OUTDIR] [-u] [-c] reference test
GUI can be launched in an Open Ondemand terminal:
$ python -m fungani