Fungani

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Description

fungani website  

FUNGANI: A BLAST-based program for analyzing Average Nucleotide Identity (ANI) between two fungal genomes, enables easy fungal species delimitation.


Environment Modules

Run module spider fungani to find out what environment modules are available for this application.

System Variables

  • HPC_FUNGANI_DIR - installation directory
  • HPC_FUNGANI_BIN - executable directory
  • FUNGANI_DIR - github directory

Additional Information

Executables need to be run from the root of the github repository. Either copy $FUNGANI_DIR or clone from github, and cd into personal 'fungani' folder:

$ module load fungani/0.1.0
$ cp -r $FUNGANI_DIR /path/to/myfungani
$ cd /path/to/myfungani

Command line executable

$ python -m fungani.cli -h
usage: fungani [-h] [-t THRESHOLD] [-p PERCENT] [-w SIZE] [-g OVERLAP] [-j CPUS] [-o OUTDIR] [-u] [-c] reference test

GUI can be launched in an Open Ondemand terminal:

$ python -m fungani