Run dbcan

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Description

run_dbcan website  

run_dbcan is the standalone version of dbCAN annotation tool for automated CAZyme annotation. The application is useful for the following:

(1) CAZyme substrate prediction based on dbCAN-sub; and

(2) CGC substrate prediction based on dbCAN-PUL searching and dbCAN-sub majority voting.

For CGC substrate prediction, please see the dbCAN-seq paper by Zheng et al. 2023 for details.

Environment Modules

Run module spider run_dbcan to find out what environment modules are available for this application.

System Variables

  • HPC_RUN_DBCAN_DIR - installation directory





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