Scythe
Revision as of 21:24, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.
Required Modules
Serial
- scythe
System Variables
- HPC_SCYTHE_DIR - installation directory
Validation
- Validated 4/5/2018