Description

bismark website

Bismark is a bisulfite read mapper and methylation caller.

Required Modules

modules documentation

Serial

bismark

System Variables

HPC_BISMARK_DIR - installation directory

Citation

If you publish research that uses bismark you have to cite it as follows:

Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. PubMed PMID: 21493656; PubMed Central PMCID: PMC3102221.

Validation

Validated 4/5/2018

Bismark