NextDenovo
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Description
NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strategy similar to canu (no correction step for PacBio Hifi reads), but requires significantly less computing resources and storages. After assembly, the per-base accuracy is about 98-99.8%, to further improve single base accuracy, please use NextPolish.
Environment Modules
Run module spider nextdenovo to find out what environment modules are available for this application.
System Variables
- HPC_NEXTDENOVO_DIR - installation directory
Citation
If you publish research that uses nextdenovo you have to cite it as follows:
We are now preparing the manuscript of NextDenovo, so if you use NextDenovo now, please cite the official website (https://github.com/Nextomics/NextDenovo)