Deprecation

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Apps and Databases to Remove

A list of software and the databases that are going to be deprecated.

2020-04-01

  • tophat - 2.0.8b, 2.0.1, 2.0.13, 2.0.11, 1.4.1, 1.3.3b, 1.3.0
  • MATS - 3.0.4.beta, 3.0.6.beta, 3.0.8
  • afni - 2011_12_21_1014, 2013_05_31, 2013_11_24-openmp
  • agalma - 0.2.1
  • amuse - 6.0
  • arc - 20130715
  • bayesrate - 1.3.43
  • beta - 1.0.5
  • cgat - 0.2.3
  • cufflinks - 1.3.0, 2.0.0, 2.0.2

2020-03-01

  • homer - 20130529, 4.5, 4.6, 4.7, databases
  • fgenesb - 2012, databases
  • picrust - 1.0.0-gx
  • qiime - 1.5.0, 1.6.0, 1.8.0, 1.9.0
  • iprscan - 4.8, 5.0rc6, 5.19-58.0, 5.24-63.0, 5.25-64.0, 5.26-65.0, 5.29-68.0.bak, database
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