SMC++

Description

smcpp website  

SMC++ is a program for estimating the size history of populations from whole genome sequence data.

Required Modules

Serial

• gcc/5.2.0
• smcpp

System Variables

• HPC_{{#uppercase:smcpp}}_DIR - installation directory
• HPC_{{#uppercase:smcpp}}_BIN - executable directory

Citation

If you publish research that uses smcpp you have to cite it as follows:

J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.