BinSanity
Revision as of 13:45, 9 September 2016 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|binsanity}} |{{#vardefine:url|https://github.com/edgraham/Bin...")
Description
Program implements Affinity Propagation to cluster contigs into putative genomes. BinSanity uses contig coverage as an input, while BinSanity-refine incorporates tetranucleotide frequencies, GC content, and an optional input of coverage. All relevant scripts to produce inputs for BinSanity are provided here.
Required Modules
Serial
- binsanity
System Variables
- HPC_{{#uppercase:binsanity}}_DIR - installation directory
Citation
If you publish research that uses binsanity you have to cite it as follows:
Graham, E., Heidelberg, J. & Tully, B. BinSanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation. bioRxiv, doi:10.1101/069567 (2016).