CGATools
Revision as of 18:31, 16 May 2012 by Moskalenko (talk | contribs)
Description
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The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.
Template:App Location
Available versions
- 1.5.0.31
Running the application using modules
To use cgatools with the environment modules system at HPC the following commands are available:
Get module information for cgatools:
$module spider cgatools
Load the default application module:
$module load cgatools
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CGATOOLS_DIR - directory where cgatools is located.
- HPC_CGATOOLS_BIN - executable directory
- HPC_CGATOOLS_INC - includes directory
- HPC_CGATOOLS_DOC - documentation directory