Foldseek
Jump to navigation
Jump to search
Description
Foldseek enables fast and sensitive comparisons of large protein structure sets.
Environment Modules
Run module spider foldseek to find out what environment modules are available for this application.
System Variables
- HPC_FOLDSEEK_DIR - installation directory
- HPC_FOLDSEEK_BIN - executable directory
- HPC_FOLDSEEK_DB - database directory
Additional Information
Example Tests Illustrating use of HPC_FOLDSEEK_DB:
foldseek easy-search $HPC_FOLDSEEK_DIR/foldseek/example/d1asha_ $HPC_FOLDSEEK_DB/PDB/pdb aln2.m8 tmp
foldseek easy-multimersearch $HPC_FOLDSEEK_DIR/foldseek/example/1tim.pdb.gz $HPC_FOLDSEEK_DB/PDB/pdb result tmp