Trim isoseq polya
Revision as of 15:04, 19 August 2022 by Israel.herrera (talk | contribs)
Description
This is a program to trim the polyA tails of DNA sequences in a Fasta format, using HMM.
It is primarily developed to process the "isoseq_flnc.fasta" file of PacBio Iso-Seq classify output, with the HMM model been trained with that data. However, with an -G option, it will process any fasta file.
Environment Modules
Run module spider trim_isoseq_polyA to find out what environment modules are available for this application.
System Variables
- HPC_TRIM_ISOSEQ_POLYA_DIR - installation directory
- HPC_TRIM_ISOSEQ_POLYA_BIN - executable directory