Circompara2
Revision as of 21:36, 1 April 2022 by Cabreraruizdiazj (talk | contribs)
Description
CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs from RNA-seq data that combines multiple circRNA-detection methods.
Environment Modules
Run module spider circompara2 to find out what environment modules are available for this application.
System Variables
- HPC_CIRCOMPARA2_DIR - installation directory
- HPC_CIRCOMPARA2_BIN - executable directory
Usage Example
$ module load circompara2/0.1.2.1
$circompara2
Citation
If you publish research that uses circompara2 you have to cite it as follows:
Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi, Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2, Briefings in Bioinformatics, 2021;, bbab418, https://doi.org/10.1093/bib/bbab418