Pyani

Description

pyani website  

pyani is a Python3 module that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output. Where available, it takes advantage of multicore systems, and can integrate with SGE/OGE-type job schedulers for the sequence comparisons.

Environment Modules

Run module spider pyani to find out what environment modules are available for this application.

System Variables

• HPC_PYANI_DIR - installation directory
• HPC_PYANI_BIN - executable directory

Citation

If you publish research that uses pyani you have to cite it as follows:

https://github.com/widdowquinn/pyani/blob/master/CITATIONS