SNAP

Description

snap website  

SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Environment Modules

Run module spider snap to find out what environment modules are available for this application.

System Variables

• HPC_SNAP_DIR - installation directory
• HPC_SNAP_BIN - executable directory

Citation

If you publish research that uses snap you have to cite it as follows:

Faster and More Accurate Sequence Alignment with SNAP. Matei Zaharia, William J. Bolosky, Kristal Curtis, Armando Fox, David Patterson, Scott Shenker, Ion Stoica, Richard M. Karp, and Taylor Sittler. arXiv:1111.5572v1, November 2011.

William J. Bolosky, Arun Subramaniyan, Matei Zaharia, Ravi Pandya, Taylor Sittler, and David Patterson. BioRxiv, November 2021.