SPAdes

Description

spades website  

St. Petersburg genome assembler

Environment Modules

Run module spider spades to find out what environment modules are available for this application.

System Variables

• HPC_SPADES_DIR - installation directory
• HPC_SPADES_BIN - executable directory

Additional Information

Spades Manual

You can create a personal phyluce config in ~/.phyluce.conf. It's mostly used to set trinity or spades memory with something like

[trinity]
max_memory:8G
kmer_coverage:2

[spades]
max_memory:6G
cov_cutoff:5