Amphora2
Revision as of 17:35, 10 June 2022 by Israel.herrera (talk | contribs)
Description
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
AMPHORA2 is free software: you may redistribute it and/or modify its under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
Environment Modules
Run module spider amphora2 to find out what environment modules are available for this application.
System Variables
- HPC_AMPHORA2_DIR - installation directory
- HPC_AMPHORA2_BIN - executable directory
- HPC_AMPHORA2_DOC - documentation directory
- HPC_AMPHORA2_EXE - test data directory
- HPC_AMPHORA2_TAX- taxonomy data directory
- HPC_AMPHORA2_TREE - tree data directory
Citation
If you publish research that uses amphora2 you have to cite it as follows: