CellRanger-DNA
Revision as of 20:15, 4 March 2019 by Moskalenko (talk | contribs)
Description
Cell Ranger DNA is a set of analysis pipelines that process Chromium single cell DNA sequencing output to align reads, identify copy number variation (CNV), and compare heterogeneity among cells.
Environment Modules
Run module spider cellranger-dna to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:cellranger-dna}}_DIR - installation directory
Additional Information
Available references: GRCh37, GRCh38