InterProScan
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
This interproscan software allows you to query your sequence against the InterPro databases.
Required Modules
Serial
- iprscan
System Variables
- HPC_IPRSCAN_DIR - installation directory
How To Run
Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'