Applications
Revision as of 15:05, 21 September 2017 by Moskalenko (talk | contribs)
- Last updated on 2017-09-21.
- Up to three latest versions are listed. The default is shown in bold if it's not the latest version.
- See output of 'module spider module_name' for a full list of provided versions.
Name | Versions | Website | Categories |
---|---|---|---|
3d-dna | 20170330 | ||
3PCLR | 20150906 | ||
4p | 1.0 | ||
AAFTF | 0.2.5 | ||
ABRicate | 1.0.1 | ||
ABruijn | 1.0 | ||
ABySS | 1.5.2, 2.1.0, 2.2.5 | ||
AdapterRemoval | 2.2.2 | ||
ADFRsuite | 1.0 | ||
ADMB | 11.5, 12.0 | ||
AdmixTools | 20150311, 7.0.2 | ||
ADMIXTURE | 1.23, 1.3.0 | ||
AEGeAn | 0.14.0, 0.16.0 | ||
AFNI | 20.3.00, 2018_04_12 | ||
AfterQC | 0.9.7 | ||
AGAT | 0.4.0 | ||
AGfusion | 1.252 | ||
Albacore | 2.3.1, 2.3.3 | ||
Albumentations | 1.0.3 | ||
Alder | 1.03 | ||
ALFA | 1.1.1 | ||
alienhunter | 1.7 | ||
AliStat | 1.12 | ||
allhic | 0.9.8 | ||
ALLMAPS | 20180117 | ||
ALLPATHS-LG | 42316, 44837, 49232 | ||
AlphaFold | 2.0.0, 2.1.2, 2.2.0 | ||
Alphaimpute | 0.0.2, 1.9.8.2, 1.9.8.3 | ||
AltAnalyze | 2.1.0 | ||
AMAS | 1.0 | ||
AMBER | 16.0, 18, 20 | ||
AMICO | 1.0.1 | ||
AMOS | 3.1.0 | ||
AMP | 0.6.1 | ||
amPEPpy | 1.0 | ||
amphora2 | 20140305 | ||
AMPtk | 1.2.4, 1.5.1 | ||
amptorch | 20210313 | ||
amrfinderplus | 3.10.18 | ||
AMRPlusPlus | 20180508 | ||
AMUSE | 10.0, 13.1.0 | ||
ANGSD | 0.933 | ||
annocript | 2.0 | ||
AnnoTALE | 1.4.1 | ||
ANNOVAR | 20130221, 20150322, 20191024 | ||
Ansible | 2.5.5, 2.8.1 | ||
ansysem | 17.0, 2022r1 | ||
antiSMASH | 4.1.0, 6.0.1 | ||
ANTs | 2.2.0, 2.3.4 | ||
anvio | 6.1, 6.2, 7.1 | ||
Appreci8 | 20180530 | ||
Apptainer | 1.0.3 | ||
APT | 1.15.0, 1.18.0, 1.20.5 | ||
ARC | 1.1.4 | ||
Aria2 | 1.35.0 | ||
ARKS | 1.0.2 | ||
Armadillo | 7.900.0, 9.200.6, 9.900.4 | ||
ARPACK | 1.0 | ||
ArrayFire | 3.4.2 | ||
arriba | 2.1.0 | ||
ART | 20160417, 20160605 | ||
artemis | 18.1.0 | ||
asap | 2.0 | ||
asaq | 1.0 | ||
ASE-ANI | 20180712 | ||
ASHS | 2.0 | ||
ASPECT | 2.3.0 | ||
Assembly-stats | 1.0.1 | ||
Assemblytics | 1.2.1 | ||
Assexon | 20190814 | ||
AStalavista | 3.2, 4.0 | ||
aster | 220718 | ||
ASTRAL | 5.6.1, 5.6.2, 5.7.7 | ||
ASTRID | 2.2.1 | ||
Astropy | 2.0.8 | ||
ATAT | 3.23, 3.34 | ||
ATLAS | 3.10.1, 3.10.2, 3.11.17 | ||
Atom | 1.57.0 | ||
AtomEye | 3 | ||
AtomMan | 1.3.3 | ||
aTRAM | 2.2.0, 2.4.3 | ||
Augustus | 3.3.2, 3.3.3, 3.4.0 | ||
Auto3DEM | 4.05.2 | ||
AutoDock | 4.2.6 | ||
AutoDock-GPU | 1.5.3 | ||
Autometa | 20190802 | ||
automlsa2 | 0.8.1 | ||
AWSCLI | 2.2.30 | ||
azoo | 1.3.1 | ||
Badread | 0.1.5 | ||
bakta | 1.3.3 | ||
BALi-Phy | 3.4.1, 3.5.0 | ||
BAM-matcher | 20161021 | ||
Bam-Readcount | 20150616 | ||
bamaddrg | 20120326 | ||
BamBam | 1.0 | ||
bamm | 2.5.0 | ||
bamsnap | 0.2.19 | ||
Bamstats | 20140602 | ||
Bamsurgeon | 1.2 | ||
bamtofastq | 1.3.5 | ||
Bamtools | 2.4.1, 2.5.0, 2.5.1 | ||
bamUtil | 1.0.2 | ||
BAPS | 6.0 | ||
Barrnap | 0.7, 0.9 | ||
Basemount | 0.15.96 | ||
BatMeth2 | 20210720 | ||
bax2bam | 0.0.9 | ||
BayArea | 1.0.2 | ||
BAYENV | 2.0 | ||
BayesAss | 3.0.4, 3.0.4.2 | ||
BayeScan | 2.1 | ||
BayesR | 20151016 | ||
BayesTraits | 3.0.2 | ||
baypass | 2.1 | ||
BBMap | 38.26, 38.44, 38.90 | ||
bcftools | 1.15, 1.3.1, 1.9 | ||
bcl2fastq | 2.16.0.10, 2.20.0.422 | ||
BDG-SeQuila | 0.5.5 | ||
BEAGLE | 4.1, 5.0, 5.2 | ||
BEAR | 20170209 | ||
BEAST | 2.6.2, 2.6.3, 2.6.7 | ||
BEAST2-XML | 1.0.9 | ||
BEDOPS | 2.4.30 | ||
BEDTools | 2.29.1, 2.29.2, 2.30.0 | ||
Bertini | 1.6 | ||
BERTopic | 0.7, 0.8.1 | ||
BESST | 2.2.4 | ||
BFAST | 0.7.0 | ||
bgenix | 1.1.7 | ||
Bifrost | 0.2, 1.0.3, 20200225 | ||
BiG-SCAPE | 1.1.2 | ||
BinPacker | 1.0 | ||
BinSanity | 0.2.6.4 | ||
Bioawk | 1.0 | ||
bioBakery | 0.15.1, 1.8, 3.0.0 | ||
Biodiverse | 2.1 | ||
Biolite | 0.3.5.1 | ||
BIOM | 2.1.5, 2.1.6 | ||
BIOMART | 1.4 | ||
Biopieces | 2.0 | ||
BIRDS | 1.0 | ||
Bismark | 0.22.3, 0.7.4, 0.7.7 | ||
Blackfynn | 0.2.7 | ||
BLASR | 20130815, 20161215 (5.3), 5.3.2 | ||
Blast2GO | 2.5.0-20120705 | ||
Blast2GO CLI | 1.3.3 | ||
BLAT | 20121105, 20140318 | ||
blender | 2.73, 2.77, 3.0.1 | ||
blink | 0.01 | ||
Blitz | 0.10 | ||
BlobTools | 1.0, 2.2 | ||
bloomfiltertrie | 0.8.7 | ||
BloomTree | 0.3.5 | ||
BLUPF90 | 20160604, 20180301, 20190531 | ||
BMGE | 1.12 | ||
bmtagger | 3.101 | ||
BOLT-LMM | 2.3.4 | ||
BoltzTraP | 1.2.5 | ||
Boost | 1.71.0, 1.75.0, 1.77.0 | ||
booster | 0.1.2 | ||
Bowtie | 1.1.1, 1.2.0, 1.2.3 | ||
Bowtie2 | 2.3.5.1, 2.4.2, 2.4.5 | ||
BoxCLI | 2.9.0 | ||
BPGA | 1.2 | ||
BPP | 4.1.4, 4.3.8, 4.4.1 | ||
Bracken | 1.0.0, 2.5 | ||
BrainIAK | 0.11 | ||
braker | 2.1.2, 2.1.5, 2.1.6 | ||
BRANCH | 1.8.1 | ||
BRATNextGen | 20150505 | ||
BreakDancer | 1.4.5 | ||
breakseq | 2.2 | ||
Brewery | 20191205 | ||
Bridger | 20141201 | ||
BRIG | 0.95 | ||
BRM | 0.3 | ||
Bruker2nifti | 1.0.4 | ||
Bsmap | 2.87 | ||
Bsoft | 1.9.1 | ||
BSseeker2 | 2.1.0, 2.1.8 | ||
bubbleparse | 20140314 | ||
BUCKy | 1.4.4 | ||
BUSCO | 4.0.6, 4.1.4, 5.2.0 | ||
BWA | 0.7.7, 0.7.8, 0.7.9a | ||
bwa-mem2 | 2.2.1 | ||
BWA-PSSM | 0.5.11 | ||
bxh_xcede_tools | 1.11.1 | ||
BYOBU | 5.133, 5.92 | ||
bzip2 | 1.0.6 | ||
c-wap | 20220624 | ||
Cactus | 2.0.3, 2.0.5 | ||
CAFE | 4.1, 5.0.0 | ||
came | 0.0.1 | ||
Camino | 20140723 | ||
CAMP | 1.0.0 | ||
Cantera | 2.1.1 | ||
Canu | 1.9, 2.0, 2.1 | ||
CANVAS | 1.40.0.1613 | ||
CAP3 | 20120705 | ||
Capnp | 0.5.3 | ||
CARTA | 2.0 | ||
CASAVA | 1.8.2 | ||
CASM | 0.2.0 | ||
CasOFFinder | 2.4 | ||
Catch | 1.4.0 | ||
CAVIAR | 20171218 | ||
CBGpipe | 20190702 | ||
CCMetagen | 1.4.0 | ||
CD-HIT | 4.6, 4.6.4, 4.6.8 | ||
CDBFasta | 20181005 | ||
CDNA_Cupcake | 20180629, 22.0.0, 9.0.1 | ||
CDO | 1.7.2rc3, 1.9.4 | ||
CellProfiler | 3.1.9, 4.1.3 | ||
CellRanger | 6.0.1, 6.1.2, 7.0.0 | ||
CellRanger-ARC | 2.0.1 | ||
CellRanger-ATAC | 1.2.0 | ||
CellRanger-DNA | 1.0.0, 1.1.0 | ||
Centrifuge | 1.0.3, 1.0.4b | ||
CFITSIO | 3.370 | ||
CGAL | 4.10, 4.9, 5.02 | ||
CGATools | 1.6.0.43 | ||
cgmaptools | 0.1.1, 0.1.2 | ||
CGView | 1.0.2 | ||
CHARMM | 36a3, 43b2 | ||
ChartDirector | 5.1.0 | ||
CheckM | 1.0.4, 1.0.7, 1.1.2 | ||
Chimera | 1.12 | ||
Chipyard | 1.0 | ||
Chromeister | 1.5a | ||
ChromEvol | 2.0 | ||
CIMS | 4.1.2 | ||
CIRCexplorer | 1.1.10 | ||
CIRCexplorer2 | 2.3.5, 2.3.8 | ||
Circlator | 1.5.5 | ||
Circleator | 1.0.2 | ||
circompara2 | 0.1.2.1 | ||
Circos | 0.63-pre11, 0.69-2, 0.69-9 | ||
CIRI | 2.0.6 | ||
ciriquant | 1.1.2 | ||
CisGenome | 2.0 | ||
cisTEM | 1.0.0 | ||
Clairvoyante | 1.02 | ||
Clann | 3.2.3 | ||
clara | v4.0 | ||
CLARK | 1.2.2-b, 1.2.3 | ||
CLHEP | 2.2.0.1 | ||
CLIFinder | 4.1 | ||
ClinicaDL | 1.0.4 | ||
clipkit | 1.3.0 | ||
CLIPper | 2.1.0 | ||
CLIPSeqTools | 0.1.7 | ||
ClonalFrame | 1.1, 1.2 | ||
ClonalFrameML | 1.0, 1.11 | ||
CloudCompare | 2.10.3 | ||
Clover | 2.0 | ||
CLUMPP | 1.1.2 | ||
ClustalO | 1.2.0 | ||
ClustalW | 2.1 | ||
cluster3 | 1.52a | ||
Clview | 20130402 | ||
CMake | 3.19.1, 3.21.3 | ||
CMS | 20170518 | ||
CMWP | 140518 | ||
CNCI | 20180305 | ||
CNSpipeline | 20170827 | ||
CNV-Seq | 20110715, 20140812 | ||
CNV-Sim | 0.9.2 | ||
CNVkit | 0.9.6 | ||
CNVnator | 0.3.2 | ||
cobra-tf | 0.1 | ||
CodonPhyML | 20150303 | ||
Coevol | 1.3c, 1.4b, 1.6 | ||
Cogent | 2.1 | ||
COLMAP | 3.6 | ||
CoMap | 1.4.1 | ||
Comp-D_MPI | 1.0 | ||
Compacta | 1.02 | ||
COMSOL | 5.4.0 | ||
Concaterpillar | 1.8a | ||
CONCOCT | 1.1.0 | ||
Conda | 4.10.3, 4.12.0 | ||
CONN | 18a | ||
CONNECT | 20200614 | ||
connectomemapper3 | 3.0.0-rc1 | ||
ConPADE | 1.0 | ||
Conpair | 20161010, 20180624 | ||
Consed | 23.0, 25.0, 29.0 | ||
CONSEL | 0.20 | ||
ContaVect | 0.2 | ||
Convert3D | 1.1.0 | ||
Coot | 0.9.5 | ||
Coreutils | 8.23, 8.28 | ||
Corset | 1.06 | ||
Counterr | 0.1 | ||
covNMR | 2014 | ||
cp2k | 7.0.0 | ||
CPAT | 3.0.2 | ||
cpc | 2.0 | ||
CPLEX | 12.6.1, 12.6.2, 12.7 | ||
Crass | 1.0.1 | ||
crisflash | 1.2.0 | ||
CRISP | 20181122 | ||
CRISPRanalyzer | 1.50 | ||
CRISPRCasFinder | 4.2.17 | ||
CRISPResso2 | 20220811 | ||
CrossMap | 0.3.9, 0.6.3 | ||
crossmapper | 1.1.1 | ||
Crux | 1.40 | ||
CryptoMiniSat | 5.0.1 | ||
csvtk | 0.23.0 | ||
ctk | 1.1.4 | ||
CUBE | 4.4 | ||
CUDA | 11.0.207, 11.1.0, 11.4.3 | ||
Cufflinks | 2.1.1, 2.2.1, 2.2.1.1 | ||
cupy | 8.3.0 | ||
cutadapt | 1.18, 2.8, 3.4 | ||
CutRunTools | 20200104 | ||
cvbio | 3.0.0 | ||
CViT | 1.3 | ||
CWLtool | 1.0.20190906, 2.0.20200126, 3.0.20210124104916 | ||
cx_oracle | 8.3.0 | ||
CycleGan | 20201015 | ||
Cytoscape | 3.4.0 | ||
d2go | 20210702 | ||
dadi | 2.1.1 | ||
DAKOTA | 6.15, 6.8, 6.8-gui | ||
DALIGNER | 1.0 | ||
dammit | 1.0rc2 | ||
DASTool | 1.1.0, 1.1.2 | ||
datamash | 1.1.0 | ||
DAWGPAWS | 1.0 | ||
DCC | 0.4.4 | ||
Dcmstack | 0.6.2 | ||
DCMTK | 3.6.0 | ||
dDocent | 2.7.8 | ||
DDSCAT | 7.3.0 | ||
DDT | 18.2, 20.0, 20.2 | ||
DealII | 8.3.0, 9.3.1 | ||
DeconSeq | 0.4.3 | ||
decontaMiner | 1.4 | ||
DECX | 20180205 | ||
DeepARG | 1.0.1 | ||
deepbgc | 0.1.18 | ||
Deepcoil | 2.0.1 | ||
DeepGS | 1.2 | ||
DeepLabCut | 2.0.7-gpu, 2.1.1, 2.2.1 | ||
deepmicrobes | 20200219 | ||
DeepMReye | 01192022 | ||
DeepPicker | 20161102 | ||
deepTools | 2.4.3, 3.1.1 | ||
deepvariant | 1.4.0 | ||
deFusion | 20200305 | ||
Delft3D | 7545 | ||
Delineate | 1.2.2 | ||
Delly | 0.7.5, 0.7.7, 0.7.8 | ||
delucs | 20220512 | ||
DeNoGAP | 1.0 | ||
DERIVA | 1.5.0 | ||
deSALT | 1.5.6 | ||
Detectron2 | 0.4, 0.5, 0.6 | ||
DeTiN | 1.7.5.9 | ||
DEXTRACTOR | 1.0 | ||
Diamond | 0.9.15, 0.9.34, 2.0.9 | ||
diCal2 | 2.2.0.1 | ||
diffReps | 1.55.4 | ||
DISCOVAR de novo | 52488 | ||
DiscoVista | 20180906 | ||
discvrseq | 1.3.10 | ||
Distruct | 2.3 | ||
DIYABC | 1.0.4.43b, 2.0.3, 2.1.0 | ||
DL_POLY | 1.9 | ||
Dlib | 19.19 | ||
DNA Clust | 3.0 | ||
DOCK | 6.7, 6.8, 6.9 | ||
DoGFinder | 20201103 | ||
DosageConvertor | 1.0.3 | ||
DOT | 2.0 | ||
Doxygen | 1.8.3.1 | ||
dragmap | 1.2.1 | ||
dragonflye | 1.0.12 | ||
DRAP | 1.91 | ||
dRep | 2.3.2 | ||
Dropseq | 2.4.0 | ||
DS9 | 7.5, 8.0.1 | ||
DScribe | 1.2.0 | ||
dsistudio | 20210123 | ||
DSK | 2.1.0, 2.3.0 | ||
DSRC | 2.0 | ||
DSSAT | 4.6 | ||
DSSP | 2.2.1, 3.0.0 | ||
DSuite | 0.4, 0.4-r41 | ||
dtiprep | 0.1.1 | ||
duchamp | 1.6.2 | ||
dynamicDBG | 20181003 | ||
Dynare | 4.4.3 | ||
ea-utils | 1.04.807.18, 1.1.2.537 | ||
EAGLE | 2.0 | ||
eagle-rc | 1.1.1 | ||
ECE | 1.2 | ||
EDirect | 10.7, 12.2 | ||
EDTA | 1.9.6 | ||
Edyeet | 0.1, 0.3 | ||
EEGLAB | 12.0.2.1b, 13.2.2b, 13.4.4b | ||
eGene-MVN | 0.1 | ||
eggNOG-mapper | 2.0.1, 2.1.6 | ||
EGSnrc | 2019 | ||
EIGENSOFT | 4.2, 5.0.1, 6.0.1 | ||
Elastix | 4.9.0 | ||
ELPA | 2019.11.001 | ||
elPrep | 4.1.4 | ||
Emacs | 27.2 | ||
EMAN2 | 2.22, 2.31 | ||
EMBOSS | 6.6.0 | ||
Embree | 3.6.1 | ||
EMC | 9.4.3 | ||
EMMAX | 20100307, 20120210 | ||
EnergyPlus | 9.3.0 | ||
Ensembl Tools | 100, 80 | ||
enTAP | 0.6.1.2, 20160416 | ||
EPACTS | 3.2.6, 3.4.2, 3.4.2.hg38 | ||
EpiNano | 1.2.0 | ||
epiteome | 1.0 | ||
epoch | 4.7.3 | ||
eQTLA | 1.1 | ||
eQtlBma | 1.2.2, 1.3.0r20140820 | ||
Erpin | 5.5.4 | ||
ESOM | 1.1 | ||
ESPRESSO | 6.2.1, 6.4.1, 7.0 | ||
ESPRIT | 2009-nogap, 201102 | ||
ETE3 | 3.0.0, 3.1.1 | ||
EVidenceModeler | 1.1.1 | ||
Evigene | 20180730, 20200520 | ||
EvoLSTM | 20220103 | ||
ExaBayes | 1.5 | ||
Exonerate | 2.2.0 | ||
ExpansionHunter | 4.0.2 | ||
ExpansionHunterDenovo | 0.9.0 | ||
export2graphlan | 0.22 | ||
eXpress | 1.3.1, 1.5.1 | ||
ezaai | 1.0 | ||
face_morpher | 20190630 | ||
face_recognition | 1.2.2 | ||
fairseq | 0.12.2 | ||
FALCON | 20161027, 20161222, 20190601 | ||
FALCON_unzip | 20161222 | ||
FAR | 2.15 | ||
FAST | 1.06 | ||
fast-gep | 1.0 | ||
Fast-Plast | 1.2.6 | ||
fast5tools | 0.3.1 | ||
FASTA | 34.26.5, 36.3.6d | ||
fastai | 2.1.5, 2.6.3 | ||
FastANI | 1.1 | ||
fastchaos | 0.1.0 | ||
FastGEAR | 20161216 | ||
Fastix | 0.1.0 | ||
FastML | 3.0 | ||
Fastp | 0.20.0, 0.22.0 | ||
FASTphase | 1.4.8 | ||
FastPlast | 1.2.8 | ||
fastq-pair | 1.0 | ||
FastQ-Screen | 0.14.0 | ||
Fastq-tools | 0.8 | ||
FastQC | 0.11.4, 0.11.7, 0.9.6 | ||
FastqPuri | 1.0.7 | ||
FastQTL | 2.184 | ||
FASTRAL-constrained | 20211108 | ||
fastsimcoal | 2.6.0.3, 2.7.0.2 | ||
FastSpar | 0.0.4 | ||
fastStructure | 20150112 | ||
FastTree | 2.1.11 | ||
FastUniq | 1.1 | ||
Fastx Toolkit | 0.0.13.2, 0.0.14 | ||
fcGENE | 1.0.7, 1.0.7.1 | ||
FDSTools | 1.2.0 | ||
fdupes | 1.51 | ||
FEELnc | 0.1.1 | ||
FEniCS | 2018.1.0 | ||
Ferret | 6.82 | ||
FFmpeg | 2.1.3, 2.8.3, 4.3.1 | ||
FFTW | 3.3.6, 3.3.7, 3.3.8 | ||
fgbio | 0.5.0, 0.7.0 | ||
FGMP | 1.0.1 | ||
FIGARO | 1.1.2 | ||
Fiji | 2.0.0rc59 | ||
Filtlong | 0.2.0 | ||
Finder | 20210503, 20210609 | ||
finemap | 1.4 | ||
fineRADstructure | 0.3.2 | ||
finesse | 2.3.1 | ||
fit-sne | 1.2.1 | ||
FLAIR | 1.5 | ||
flairNLP | 0.10 | ||
flappie | 1.1.0, 2.1.3 | ||
FLASh | 1.2.10, 1.2.11 | ||
FLEA | 2.0.0 | ||
flex | 2.6.4 | ||
Flexbar | 2.3, 2.34, 3.5.0 | ||
FLEXLm | 1.0 | ||
FlowCraft | 1.4.1 | ||
Fluent | 17.2, 19.1, 2020R1 | ||
Flye | 2.7.1, 2.8.1, 2.9 | ||
fMRIPrep | 1.4.0a1, 1.5.4, 20.2.3 | ||
ForeSeqs | 1.0.4 | ||
fpocket | 4.0.2 | ||
fqtools | 20160224 | ||
FragGeneScan | 1.16 | ||
FRAMA | 20151019 | ||
FrameDP | 1.2.2 | ||
FRAPOSA | 20200421 | ||
FreeBayes | 1.1.0-20170823, 1.3.1, 1.3.2 | ||
freesasa | 2.1.2 | ||
Freesurfer | 7.1.0, 7.1.1, 7.2.0 | ||
Freyja | 1.3.1, 1.3.4, 1.3.8 | ||
FSA | 1.15.9 | ||
FSL | 6.0.3, 6.0.4, 6.0.5 | ||
fslmrs | 1.1.10 | ||
funannotate | 1.8.7, 1.8.9 | ||
fusion_twas | 20210218 | ||
GAL | 20180906 | ||
Galaxy | 1.0 | ||
GAML | 20150610 | ||
GapCloser | 1.12r6 | ||
GapFiller | 1.10, 1.11 | ||
GARLI | 2.0, 2.01 | ||
GASVPro | 201310 | ||
GATE | 7.0 | ||
GATK | 4.1.4.0, 4.1.8.1, 4.1.9.0 | ||
Gaussian | 09 D.01, 16, 16-c02 | ||
Gawk | 4.2.0 | ||
Gblocks | 0.91b | ||
GCC | 7.3.0, 8.2.0, 9.3.0 | ||
GCE | 1.0.2, 4.0 | ||
GCT | 6.2.1 | ||
GCTA | 1.26.0, 1.92.4beta, 1.93.2beta | ||
GDAL | 2.2.1, 2.2.4, 2.3.1 | ||
GDB | 8.3, 9.2 | ||
GDC-Client | 1.0.1, 1.5.0 | ||
GDrive | 2.1.0 | ||
GDSL | 1.18 | ||
Geant4 | 4.10, 4.10.03, 4.10.5 | ||
GEM | 20130406 | ||
gem5 | 2.0 | ||
GEMMA | 0.98.1 | ||
GeneMark-ES | 4.65, 4.68, 4.69 | ||
GeneMarkS | 2012.04 | ||
GeneMarkS-T | 3.10.001 | ||
GenePainter | 2.0.4 | ||
GeneRax | 1.2.2 | ||
Generic Mapping Tools | 6.4.0 | ||
GeneSeqer | 2014-02-26 | ||
genesum | 0.1.0 | ||
GeneTorrent | 3.8.7 | ||
GenGen | 1.0.1 | ||
Genome STRiP | 2.00.1602 | ||
Genome_Graph_Annotation | 20190131 | ||
GenomeScope2 | 2.0 | ||
GenomeThreader | 1.7.3 | ||
GenomeTools | 1.5.7, 1.5.9 | ||
genomic-fluidity | 20151109 | ||
GenomicConsensus | 2.3.3 | ||
GenomicNeuralnet | 20161030 | ||
GenomicTools | 2.7.0 | ||
GenotypeHarmonizer | 1.4.18 | ||
Genrich | 0.5 | ||
GenSel | 4.90 | ||
geopython | 1.0.0, 1.0.1 | ||
GEOS | 3.3.8, 3.6.2 | ||
GeP | 2.1 | ||
gepard | 1.40.0 | ||
Gerbil | 1.11 | ||
get_homologues | 3.3.3 | ||
GetOrganelle | 1.7.3.5, 1.7.5.0 | ||
GFam | 1.1 | ||
GFF-Ex | 2.3 | ||
GFF3toolkit | 2.0.3 | ||
gffcompare | 0.12.2 | ||
gffread | 0.11.8, 0.12.7, 0.9.8c | ||
Gflags | 2.2.1, 20150520 | ||
GFOLD | 1.1.4 | ||
ggsashimi | 0.5.0 | ||
GHOST-MP | 1.3.4 | ||
Ghostscript | 9.22 | ||
Giotto | 0.1.0 | ||
Git | 2.14.1, 2.30.1 | ||
git-filter-repo | 2.33.0 | ||
glactools | 1.0.8 | ||
Glimmer | 3.02 | ||
GlimmerHMM | 3.0.4 | ||
GLMsingle | 1.0 | ||
Globus | 1.10.1, 2.1.3 | ||
glog | 0.3.5 | ||
GLPK | 4.55, 4.65 | ||
Glueviz | 0.15.2 | ||
GMAP | 20180212, 20180212_sse2, 20190610 | ||
GMcloser | 1.6 | ||
GMP | 6.1.2 | ||
GnuPlot | 5.2.2, 5.2.3, 5.4.1 | ||
Go | 1.13.6, 1.15.4, 1.18.3 | ||
GOMAP | 1.3 | ||
GoPHY | 201030 | ||
gotcloud | 1.17.5 | ||
GPA | 1.1 | ||
GPhoCS | 1.2.3 | ||
Gpufit | 20201127 | ||
Grace | 5.1.22 | ||
GRACKLE | 3.1 | ||
GrADS | 2.0.1 | ||
Graftm | 0.12.2 | ||
GramCluster | 1.3 | ||
graph-tool | 2.32 | ||
Graph_annotation | 0.1 | ||
GraPhlAn | 1.1.3 | ||
GraphMap2 | 0.6.5 | ||
GraphSplitting | 2.4 | ||
graphtyper | 2.7.2 | ||
GraphViz | 2.38.0, 2.46.1 | ||
GRASS | 7.0, 7.4 | ||
grf | 1.0.0 | ||
Grib_api | 1.10.1, 1.15.1, 1.26.1 | ||
GRIDSS | 2.6.2 | ||
GROCSVs | 0.2.5 | ||
GROMACS | 2021.2, 2021.3, 2021.4 | ||
GroopM | 0.3.5 | ||
Groovy | 2.4.15 | ||
Gscripts | 1.1 | ||
GSEA | 3.0.0, 4.2.2 | ||
GSL | 2.4, 2.5, 2.6 | ||
GSNP | 1.0 | ||
GTAHunter | 20200106 | ||
GTDBTk | 1.7.0, 2.0.0, 2.1.0 | ||
GTOOL | 0.7.5 | ||
GUAVA | 1.0 | ||
Gubbins | 2.4.1, 3.2.1 | ||
guideseq | 1.0.2 | ||
guile | 2.2.2 | ||
GULP | 4.4, 5.0 | ||
guppy | 4.4.1, 4.5.4, 6.1.7 | ||
Gurobi | 9.5.1 | ||
GWAMA | 2.2.2 | ||
Gzip | 1.10 | ||
Hail | 0.2.77 | ||
hal | 2.1 | ||
HALC | 1.1 | ||
halla | 0.8.17 | ||
HaMStR | 13.2.3, 13.2.4, v8b | ||
hapbin | 1.3.0 | ||
HapCompass | 0.7.7 | ||
HAPCUT | 0.7 | ||
HapCUT2 | 1.3.3 | ||
hapdup | 0.6 | ||
Haploflow | 0.1 | ||
Haplomerger2 | 20180603 | ||
HAPLOSWEEP | 1.0 | ||
happy | 0.3.14 | ||
hapQTL | 1.00 | ||
hapsembler | 2.21 | ||
HASLR | 0.8a1 | ||
hclust2 | 1.0.0 | ||
HDF4 | 4.2.11 | ||
HDF5 | 1.8.19, 1.8.20, 1.8.9 | ||
hecaton | 0.5.1 | ||
HELEN | 20200516 | ||
HelitronScanner | 1.1 | ||
hgraph2graph | 20210428 | ||
HiC-Pro | 3.0.0 | ||
Hifiasm | 0.16.1, 0.4, 0.8 | ||
HipSTR | 0.7 | ||
HISAT2 | 2.2.0, 2.2.1, 2.2.1-3n | ||
HLAminer | 1.3.1, 1.4 | ||
HMM-FRAME | 20140724 | ||
HmmCleaner | 0.180750 | ||
HMMER | 3.1b1, 3.1b2, 3.2.1 | ||
hmmer2go | 0.18.1 | ||
HMMRATAC | 1.2.10 | ||
HOMER | 4.10, 4.11, 4.8 | ||
homopolish | 0.3.3 | ||
HOOMD | 2.1.7 | ||
HPL | 2.1 | ||
HTMLDoc | 1.8.28, 1.9.3 | ||
HTSeq | 0.11.2 | ||
HUMAnN | 2.8.1 | ||
humann2 | 0.11.2, 2.8.1 | ||
hyb | 20141126, 20200815 | ||
HybPiper | 1.2, 1.3.1, 2.0.1 | ||
HyDe | 0.4.3 | ||
HyPhy | 2.5.4, 2.5.7, 2.5.8 | ||
HYPRE | 2.15.1, 2.18.2, 2.19.0 | ||
iAnnotateSV | 1.0.6, 1.0.9 | ||
iAssembler | 1.3.2 | ||
ibdne | 20150815 | ||
icommands | 3.3.1 | ||
IDBA-MT | 1.0 | ||
IDBA-UD | 1.1.1, 1.1.1-512, 1.1.1-512-mem | ||
IDL | 8.3 | ||
IDR | 2.0.3 | ||
IGB | 8.4.1 | ||
igBLAST | 1.5.0, 1.7.0 | ||
IGoR | 1.4.0 | ||
iGTP | 1.1 | ||
IGV | 2.3.91, 2.4.16, 2.8.6 | ||
illumina-utils | 2.11 | ||
Illumiprocessor | 2.0.9 | ||
IM and IMa | 20091217 | ||
Ima2 | 20120827 | ||
IMa2p | 20170712 | ||
IMA3 | 22Aug18 | ||
ImageJ | 1.48 | ||
ImageMagick | 7.0.8-20 | ||
Imaginaire | 20201229 | ||
IMOD | 4.7.15, 4.9.10 | ||
imoka | 1.0 | ||
IMPUTE2 | 2.3.2 | ||
IMPUTE5 | 1.1.5 | ||
INDELible | 1.03 | ||
Infernal | 1.1.1, 1.1.4 | ||
INLA | 20160718, 20170620 | ||
InParanoid | 4.1 | ||
Inspector | 1.0.2 | ||
InStruct | 20160723 | ||
Intel Compilers and Libraries | 2018.1.163, 2019.1.144, 2020.0.166 | ||
Intel MPI | 5.1.1 | ||
InterProScan | 5.54-87.0, 5.56-89.0, 5.57 | ||
intervene | 0.6.2 | ||
IOAPI | 3.1, 3.2 | ||
IPOPT | 3.12.10, 3.12.6 | ||
ipyrad | 0.7.24, 0.7.30, 0.9.53 | ||
IQ-TREE | 2.1.0, 2.1.2, 2.1.3 | ||
IRAP | 0.8.1p7 | ||
irep | 1.10 | ||
IRFinder | 1.2.0, 1.3.0, 1.3.1 | ||
isONclust | 0.0.6 | ||
IsoSel | 1.0 | ||
IsoSeq3 | 3.2.2, 3.4.0, 3.7.0 | ||
ISOWN | 20180820 | ||
isPcr | 3.3 | ||
ITK | 3.20.1, 4.10.1 | ||
ITK-SNAP | 3.0.0, 3.8.0 | ||
ITSx | 1.1b | ||
IVA | 1.0.11 | ||
iVar | 1.3.1 | ||
Jabba | 1.0 | ||
JACUSA | 1.2.0 | ||
JAGS | 3.3.0, 3.4.0, 4.2.0 | ||
Jasmine | 1.1.4 | ||
jasp | 0.14.3 | ||
jbrowse2 | 1.7.4 | ||
JCVI | 0.8.12, 1.0.13, 1.2.10 | ||
JDK | 11.0.1, 14, 9.0.1 | ||
Je | 1.0 | ||
Jellyfish | 2.2.4, 2.2.6, 2.3.0 | ||
jModelTest | 2.1.1 | ||
jo | 1.3 | ||
jq | 1.6 | ||
juicer | 1.22.01 | ||
Julia | 1.6.2, 1.7.1, 1.7.3 | ||
Jupyter | 5.7.8, 6.0.3, 6.2.0 | ||
jutils | 1.0 | ||
JVARKIT | 20180405 | ||
Kaiju | 1.6.2, 1.7.2 | ||
KaKs | 1.2, 2.0 | ||
Kalign | 3.3.1 | ||
kallisto | 0.43.0, 0.44.0, 0.48.0 | ||
khmer | 2.0, 2.1 | ||
KIM | 1.7.2, 1.8.2, 1.9.3 | ||
KING | 2.1.2 | ||
KisSplice | 2.4.0-p1 | ||
KLayout | 0.26.7 | ||
KMC | 3.1.0, 3.1.1, 3.2.1 | ||
kmerdb | 1.9.2 | ||
KMOS | 0.3.21 | ||
kneaddata | 0.7.4, 0.9.0 | ||
Knitro | 12.2.0 | ||
KofamScan | 1.3.0 | ||
kover | 2.0.3 | ||
Kraken | 2.0.6b, 2.0.8b, 2.1.2 | ||
KrakenUniq | 0.5.8, 0.7.3 | ||
Krona | 20161019 | ||
ksnp | 3.021 | ||
Ksrates | 1.1.1 | ||
LACHESIS | 2.1 | ||
Lambda | 0.9.4, 1.0.3, 2.0.0 | ||
LAMMPS | 30Jul16, 7Aug19, 7Dec15 | ||
LAMP | 2.5 | ||
laneta | 20220517, 20220808, 20220812 | ||
langdetect | 1.0.9 | ||
LAPACK | 3.8.0 | ||
Last | 916, 979 | ||
LAStools | 20200114 | ||
LASTZ | 1.02.00, 1.03.02, 1.04.00 | ||
Lazypipe | 1.2 | ||
LazyPredict | 0.2.8 | ||
lbzip | 2.5 | ||
LCModel | 6.3 | ||
ldak | 5.2 | ||
LDhat | 2.2a | ||
ldsc | 1.0.1 | ||
leafaudio | 0.1.0 | ||
LEfSe | 20180219 | ||
LEMON | 1.2.3 | ||
LFMM | 1.4, 1.5 | ||
Libint | 2.5.0, 2.5.0b | ||
libMesh | 1.5.0 | ||
libunistring | 0.9.7 | ||
libvips | 8.5.4 | ||
LIBXC | 4.2.3, 4.3.4 | ||
LIBXSMM | 1.13 | ||
LIBZMQ | 4.3.1 | ||
Liftoff | 1.4.2 | ||
LIGR | 2.05 | ||
lima | 2.0.0, 2.2.0 | ||
lingua | 1.0.1 | ||
LINKS | 1.8.5, 1.8.6 | ||
Linksbrowser | 2.14 | ||
LIQA | 1.0.0 | ||
LMAP | 1.0.2 | ||
lncScore | 1.0.2 | ||
lobSTR | 4.0.6 | ||
localbrainage | 20210415 | ||
localizer | 1.0.4 | ||
LocusZoom | 1.4 | ||
LoFreq | 2.1.3.1 | ||
LongQC | 1.2.0c | ||
LongRanger | 2.1.5, 2.2.2 | ||
LongStitch | 1.0.3 | ||
LoRDEC | 0.9 | ||
LoRMA | 0.3, 0.5 | ||
LRBinner | 0.1 | ||
lrgapcloser | 09042018 | ||
LS-DYNA | 700, 711, 901 | ||
LSD2 | 1.6.5 | ||
ltr_finder | 1.07 | ||
LTRRetriever | 2.1, 2.5, 20170514 | ||
Lua | 3.5.2 | ||
Lucene | 7.7.1, 9.1.0 | ||
lumpy-sv | 0.2.1, 0.2.13, 0.3.1 | ||
LZO | 2.09 | ||
M5nr | 20121126 | ||
Macaulay2 | 1.15 | ||
MACH | 1.0.18 | ||
Mach2VCF | 20150515 | ||
MACS | 2.0.10, 2.1.2, 2.2.7.1 | ||
MafFilter | 1.3.0 | ||
MAFFT | 7.294, 7.397, 7.490 | ||
MAGeCK | 0.5.9.4 | ||
MAGeCK-VISPR | 0.5.6 | ||
MAGeCKFlute | 1.14.0 | ||
Magenta | 2.1.2 | ||
MAGMA-GWAS | 1.09 | ||
magus | 20220121 | ||
MAJIQ | 2.2, 2.3 | ||
Maker | 2.31.10, 2.31.6, 3.01.03 | ||
MAnorm | 20120316 | ||
MANTA | 1.6.0 | ||
mantis | 1.0.4 | ||
mapclassify | 2.4.2 | ||
MapThin | 1.11 | ||
Maq | 0.7.1 | ||
MarginPolish | 1.0.0 | ||
MARK | 2.0.1 | ||
MarkerMiner | 20150710 | ||
Mash | 1.1, 2.3 | ||
MasHmap | 2.0 | ||
mashtree | 1.2.0 | ||
MASS | 1.1.1 | ||
MASSMINE | 0.10.0, 0.11.0, 0.9.5 | ||
MaSuRCA | 4.0.8, 4.0.9, 4.1.0 | ||
Mathematica | 12.1.1.0 | ||
MATLAB | 2020a, 2020b, 2022a | ||
MATS | 4.0.1, 4.0.2, 4.1.0 | ||
Mauve | 2.3.1 | ||
mawk | 1.3.4-20150503 | ||
maxbin | 2.1.1 | ||
Maxima | 5.41.0 | ||
MC | 4.6.1 | ||
mCarts | 1.0.2 | ||
mccortex | 1.0 | ||
MCL | 12-135, 14-137 | ||
MCNP | 6, 6.1 | ||
MCNPX | 2.7.0 | ||
MCR | 2019b, 2020a, 2020b | ||
MCScanX | 20130328 | ||
mdanalysis | 1.1.1 | ||
MECAT | 20180308 | ||
Medaka | 1.0.1, 1.2.1, 1.6.0 | ||
Medusa | 1.6 | ||
MEGA | 7.0.26 | ||
Mega2 | 4.9.2, 6.0.0 | ||
MEGAHIT | 1.1.1, 1.1.4 | ||
Megalodon | 2.0.0 | ||
MEGAN | 5.10.3, 6.23.4, 6.4.15 | ||
MEGASAT | 1.0 | ||
Megraft | 1.0.2 | ||
MELD | 0.4.14, 0.4.19, 0.5.9 | ||
MELTING | 4.3.1 | ||
MEME | 5.0.2, 5.0.5, 5.4.1 | ||
MentaLiST | 0.1.3 | ||
Meraculous | 2.0.5 | ||
Mercurial | 4.8.2 | ||
merge_peaks | 0.1.0 | ||
Merlin | 1.1.2 | ||
Merqury | 1.1, 1.3 | ||
Meryl | 1.0 | ||
MeShClust | 1.2.0 | ||
Meshroom | 2019.2.0 | ||
MET | 10.0 | ||
Meta-Marc | 1.0.0 | ||
Meta-Tissue | 0.4 | ||
MetaBAT | 0.32.4, 2.13 | ||
MetaBCC-LR | 2.0.0 | ||
Metabin | 1.0 | ||
metabolic | 4.0 | ||
MetaCherchant | 0.1.0 | ||
MetaCluster | 5.0b | ||
MetaCompare | 20181016 | ||
metacrast | 20200309 | ||
MetaGeneMark | 2.10, 3.26 | ||
METAL | 20110325 | ||
MetaLAFFA | 1.0.0 | ||
MetaMaps | 20201207 | ||
METANNOT | 20171129 | ||
Metaphlan | 3.0.3, 3.1.0, 4.0.1 | ||
MetaPhlAn2 | 2.7.7 | ||
MetaPhysicl | 1.0.0 | ||
MetaSV | 0.5.4 | ||
MetaVelvet | 1.2.06 | ||
metaWRAP | 1.2 | ||
Metaxa2 | 2.1.1, 2.1.3 | ||
MethylDackel | 0.5.0, 0.6.1 | ||
methylpy | 1.2.9 | ||
Metilene | 0.2.8 | ||
METIS | 5.1.0 | ||
Mfannot | 20180405 | ||
mfold | 3.6 | ||
mg-rast | 20150919 | ||
MGEfinder | 1.0.5 | ||
MGERT | 1.0.1 | ||
MGEScan | 20160416 | ||
MGLTools | 1.5.7 | ||
MHAP | 1.6 | ||
MHCflurry | 1.4.3 | ||
MIA | 20130201 | ||
MicrobeAnnotator | 2.0.5 | ||
MIDAS | 1.3.2, 20160830 | ||
MIGRATE-N | 4.2.14, 4.4.4, 5.0.4 | ||
Mikado | 2.3.3 | ||
MIKE | 1.0 | ||
Minced | 0.2.0 | ||
Minia | 3.2.6 | ||
Miniasm | 0.2-r168, 0.3-r179 | ||
MiniCaller | 20161201 | ||
minigraph | 0.15 | ||
minimac | 1-20130717, 3-20150727 | ||
minimac2 | 2-20140915 | ||
minimap | 2.1t, 2.21, 2.9-r720 | ||
minimap2 | 2.24 | ||
Minipolish | 0.1.3 | ||
MinkowskiEngine | 0.5.3 | ||
MinPath | 1.4 | ||
MIRA | 4.0.rc1, 4.9.6, 5rc2 | ||
miRanda | 1.9 | ||
miRBShunter | 0.2 | ||
mirdeep | 0.1.0, 0.1.1, 2.0.1.3 | ||
miRDP2 | 1.1.4 | ||
Mireap | 0.20 | ||
miRge | 2.0 | ||
Misa | 1.0 | ||
MISO | 0.5.3 | ||
MITE-Hunter | 20111101 | ||
MITObim | 1.9.1 | ||
MitoFinder | 1.0.2, 1.1, 1.4 | ||
mitohifi | 2.2 | ||
MitoPhAST | 3.0 | ||
Mitsuba2 | 2.2.1 | ||
MiXCR | 2.1.8, 3.0.13 | ||
MixMHC2pred | 1.2 | ||
MixMHCpred | 2.0.2 | ||
mixmogam | 20190322 | ||
MKL | 2018.1.163, 2019.1.144, 2020.0.166 | ||
mlcoalsim | 1.9916b | ||
mlpack | 3.4.2 | ||
mlst | 2.15.2 | ||
mlstcheck | 2.1 | ||
MMSEQ | 1.0.8 | ||
MMseqs2 | 11, 12 | ||
MMvec | 1.0.5, 1.0.6 | ||
MNEtools | 0.22.0 | ||
MOABS | 1.2.9, 1.3.2, 1.3.4 | ||
mobsuite | 3.1.0 | ||
MOCCASIN | 0.25 | ||
MODELLER | 9.14, 9.23 | ||
MODELTEST | 0.1.2, 0.1.7 | ||
Modulus | 21.06, 22.03 | ||
Molden | 5.0 | ||
momi | 2.1.19 | ||
monai | 0.8, 0.8.1, 0.9.0 | ||
MONAI label | 0.3.2 | ||
MongoDB | 4.0.3 | ||
Moni | 0.2.0 | ||
mono | 5.18 | ||
Monolix | 4.3.2 | ||
MOOSE | 20200722, 20210726, 20220610 | ||
Mosaic | 1.7.4 | ||
MOSAIK | 2.1.33, 2.2.3, 2.2.30 | ||
Mosdepth | 0.2.3, 0.3.1 | ||
Mothur | 1.38.1, 1.41.3, 1.46.1 | ||
MotionCor2 | 1.2.3, 1.3.1 | ||
mOTU | 1.1 | ||
mOTUs | 2.5.1 | ||
MountainSort | 0.9.0 | ||
MP-EST | 1.4 | ||
MPACK | 0.8.0 | ||
MPB | 1.5 | ||
MPBoot | 1.1.0 | ||
MPFR | 3.1.6 | ||
mpinterfaces | 20170613 | ||
MrBayes | 3.2.4, 3.2.5, 3.2.6 | ||
MRIcroGL | 20201102, 20210327, 20211006 | ||
MRIcron | 201306, 20161012, 20190911 | ||
mriqc | 0.11.0, 0.16.1, 22.0.1 | ||
MRtrix | 3.0.1, 3.0.3, 3.0rc2 | ||
ms | 20171108 | ||
ms-dial | 4.4.8 | ||
msfinder | 3.52 | ||
mSINGS | 20180810 | ||
MSMC-Tools | 20190614 | ||
msprime | 0.7.4 | ||
MstatX | 1.0 | ||
MSTmap | 1.0 | ||
msvar | 1.3 | ||
MTG2 | 2.15 | ||
mTR | 20210526 | ||
Mugsy | 1.2.3 | ||
MultiQC | 1.12, 1.7 | ||
MUMmer | 3.23, 4.0.0beta2 | ||
MUSCLE | 3.8.31 | ||
MuSE | 1.0rc | ||
Musket | 1.1 | ||
MuTect | 1.1.4, 1.1.7 | ||
MutSig | 1.4, 1.41 | ||
mvftools | 20191124 | ||
mxnet | 22.08 | ||
MZMine | 2.41, 2.52, 2.53 | ||
NAMD | 2.14, 2.14b2, 3.0 Alpha | ||
NANO | 2.8.2 | ||
nanocomp | 1.17.0 | ||
NanoCount | 0.2.1 | ||
Nanodisco | 1.0.3 | ||
Nanofilt | 2.7.1 | ||
nanolyse | 1.2.0 | ||
NanoPlot | 1.30.1 | ||
Nanopolish | 0.11.1, 0.13.2, 20171006 | ||
nanostripper | 0.1 | ||
NanoSV | 1.2.0, 1.2.3, 1.2.4 | ||
NanoVar | 1.3.9 | ||
Napari | 0.3.8, 0.4.7 | ||
NBODY | 6 | ||
NCBI BLAST+ | 2.7.1, 2.8.1, 2.9.0 | ||
NCBI C++ Toolkit | 12.0.0, 21.0.0, 7.0.0 | ||
NCBI GenBank Tools | 20140130 | ||
ncbi-vdb | 2.6.3, 2.8.2 | ||
nccl | 20.11 | ||
ncftp | 3.2.5 | ||
NCL | 6.1.2, 6.3.0 | ||
NCO | 4.2.1, 4.4.3 | ||
ncview | 2.1.2, 2.1.7 | ||
NECAT | 202001019 | ||
Necklace | 1.00 | ||
NeEstimator | 2.1 | ||
nemo | 1.0.0rc1, 1.0.1, 1.2.0 | ||
neovim | 0.2.0 | ||
NetCDF | 4.3, 4.3.3, 4.4.3 | ||
NetCDF-C | 4.7.4, 4.8.1, 4.9.0 | ||
NetCDF-F | 4.4.4, 4.5.3, 4.5.4 | ||
NetLogo | 5.3.64, 6.1.1, 6.2.0 | ||
NEURON | 7.7.2, 8.0.0, 8.2.1 | ||
Newbler | 2.7, 2.8, 2.9 | ||
newick-utils | 1.6 | ||
newick_utils | 1.6, 1.7 | ||
NewTargets | 20210215 | ||
NextDenovo | 2.4.0 | ||
Nextflow | 21.04.0, 21.10.6, 22.04.5 | ||
NextGenMap | 0.5.5 | ||
NextPolish | 1.3.1 | ||
Nextstrain | 1.16.1 | ||
nf-core | 1.12.1, 2.1 | ||
NGC CLI | 2.10.1 | ||
NGmerge | 0.3 | ||
ngmlr | 0.2.6, 0.2.7 | ||
ngs-bits | 0.1 | ||
NGS-SDK | 1.2.4, 1.3.0 | ||
ngscheckmate | 1.0 | ||
ngstools | 20150816 | ||
nilearn | 0.7.0, 0.9.0 | ||
nimare | 0.0.5 | ||
Nipype | 1.6.0, 1.7.0, 1.8.0 | ||
nlp | 1.1, 1.2 | ||
nlr-annotator | 0.7 | ||
NLR-Parser | 1.0 | ||
NMRPipe | 7.9, 8.2 | ||
NONMEM | 7.3.0, 7.4.4 | ||
nonpareil | 3.3.4 | ||
Novoalign | 2.08.02, 3.00.02 | ||
NOVOPlasty | 3.7, 4.2, 4.3 | ||
nPhase | 1.1.3 | ||
npScarf | 1.7 | ||
nQuire | 20180405 | ||
Nsight | 2022.1 | ||
Nsightsys | 2022.2.1 | ||
nt | 20220404 | ||
ntEdit | 1.2.1 | ||
nubeamdedup | 20200907 | ||
NucDiff | 2.0.3 | ||
NucleoATAC | 0.3.1 | ||
Nullarbor | 1.41 | ||
Numba | 0.36.2, 0.43.1, 0.48.0 | ||
NUPACK | 3.2.2 | ||
nvhpc | 11.1, 21.7 | ||
nVidia HPC Compilers | 20.11 | ||
NWChem | 6.8 | ||
NxTrim | 0.4.1 | ||
Oases | 0.2.08 | ||
OCaml | 4.02.3 | ||
OCOCO | 0.1.2.6 | ||
octave | 6.4.0, 7.2.0 | ||
odgi | 0.6 | ||
Olego | 1.1.2, 1.1.5, 1.1.6 | ||
OmicsBox | 1.1.78 | ||
OMindel | 20180129 | ||
omniCLIP | 0.1.0 | ||
OMNIVERSE | beta211004 | ||
OMSV | 1.0.1 | ||
ONT-Bonito | 0.1.5, 0.5.3, 0.6.0 | ||
ont_fast5_api | 2.0.1, 4.0.2 | ||
ont_tutorial_cas9 | 20190705 | ||
open-cravat | 2.0.1 | ||
open3d | 0.13.0 | ||
OPENACC | 16.7 | ||
OpenBabel | 2.3.2, 2.4.1, 3.1.1 | ||
OpenBLAS | 0.2.20 | ||
OpenCL | 18.1.0.013 | ||
OpenCV | 4.5.2 | ||
OpenFOAM | 4.1, 5.0, 8.0 | ||
OpenMM | 7.5, 7.5.0, 7.6.0 | ||
OpenMPI | 4.0.4, 4.0.5, 4.1.1 | ||
OpenNeuro | 3.17.4, 3.37.4 | ||
OpenPIV-python | 0.21.2 | ||
OpenPIV-python-gpu | 20190506-gpu | ||
OpenSim | 4.3 | ||
OpenSlide | 3.4.1 | ||
OptiType | 1.3.1 | ||
Orange3 | 3.3.6 | ||
ORCA | 4.0.1.2 | ||
OrganellePBA | 20180904 | ||
OrthoFiller | 1.1.4 | ||
OrthoFinder | 1.1.10, 2.3.11, 2.5.2 | ||
Orthofisher | 0.1.2 | ||
Orthograph | 0.6.3 | ||
Orthologer | 2.2.0 | ||
OrthoMCL | 2.0.3, 2.0.7 | ||
osprey | 1.1.0 | ||
OTB | 5.8.0 | ||
p4est | 1.1, 2.8 | ||
p4vasp | 0.3.29, 0.3.30 | ||
p53MH | 20020901 | ||
p7zip | 9.20.1 | ||
PacBio | 10.2.0.133434, 11.0.0.146107, 7.0.1 | ||
Package-GFE | 20150701 | ||
PALADIN | 1.3.1 | ||
PALES | 122 | ||
PAML | 4.8a, 4.9a, 4.9h | ||
Pandaseq | 20140808, 20150627 | ||
Pandoc | 2.2.2.1 | ||
pangolin | 2 | ||
panseq | 3.2.1 | ||
panX | 1.6.0 | ||
PAPI | 5.5.1, 5.7.0 | ||
parabricks | 3.5.0, 3.7.0 | ||
parallel | 20150122, 20170322 | ||
paralyzer | 1.5 | ||
ParaView | 5.4.1, 5.7.0, 5.9.1.1 | ||
ParaView Server | 5.10.1 | ||
ParGenes | 1.2.0 | ||
ParlAI | 1.3.0, 1.5.0 | ||
Parsnp | 1.2, 1.5.0, 1.6.2 | ||
PartitionFinder | 2.0.0-pre-20160513, 2.1.1-20161205, 2.1.1.0 | ||
PASA | 2.0.2-r20151207, 2.2.0-r20171013, 2.4.1 | ||
Pascal | 3.0.0 | ||
PASTA | 0.2.0, 1.7.8, 20160616 | ||
PATHd8 | 1.0 | ||
pathoscope | 2.0.7 | ||
PATRIC | 1.034 | ||
PAUDA | 1.0.1 | ||
PAUP | 4.0a166, 4.0a168, 4.0b10 | ||
PB-Assembly | 0.0.6, 0.0.8 | ||
pbalign | 20160921, 20161221 | ||
PBCCS | 5.0.0 | ||
pbcore | 1.7.1 | ||
PBGCpp | 1.9.0 | ||
pbipa | 1.8.0 | ||
PBJelly | 15.8.24 | ||
pbmm2 | 1.3.0 | ||
pbrt | 20181017 | ||
pbsmrtpipe | 0.63.0 | ||
pbtranscript-tofu | 20150317, 20160119 | ||
PCIT | 2014 | ||
PCRE | 8.38, 8.39 | ||
PDA | 1.0.3 | ||
pdb2pqr | 2.1.0 | ||
PeakSplitter | 1.0 | ||
PEAR | 0.9.2 | ||
peneasy | 20150530 | ||
PennCNV | 1.0.5 | ||
Perl | 5.16.0, 5.20.0, 5.24.1 | ||
PerM | 0.4.0 | ||
PETSc | 3.8.1, 3.8.3, 3.8.4 | ||
PfamScan | 1.3, 1.5 | ||
PGAP | 20220414 | ||
PGDSpider | 2.0.9.0, 2.1.1.5 | ||
pggb | 0.4.1, 20201106, 20210121 | ||
PhaME | 1.0.3 | ||
pharmcat | 1.8.0 | ||
PHASE | 2.1.1 | ||
PHAST | 1.5 | ||
Phenix | 1.10.2155, 1.17.1, 1.8.1069 | ||
PHI | 3.1.1, 3.1.2b, 3.1.6 | ||
PhiSpy | 3.2 | ||
PHITS | 2.76, 2.82, 2.84 | ||
PHLAWD | 20170427 | ||
PhotoScan | 1.4.1, 1.4.5 | ||
Photutils | 0.5 | ||
PHYLDOG | 20130116-dbg | ||
PHYling | 1.0 | ||
PHYLIP | 3.696 | ||
PhyloAcc | 1.0 | ||
PhyloBayes | 3.3f | ||
phyloFlash | 3.3b4 | ||
phylonet | 3.5.7, 3.8.2 | ||
PhyloParser | 20180404 | ||
PhyloPhlAn2 | 0.41 | ||
phylopypruner | 1.2.3 | ||
PhyloSift | 1.1 | ||
phyloTF2 | 20210726 | ||
Phyluce | 20180727, 20190308, 20191015 | ||
PhyML | 3.0, 3.1 | ||
phynd | 20200409 | ||
Physher | 1.0.2 | ||
PHYUTILITY | 2.7.1 | ||
Phyx | 1.1 | ||
PIA2 | 20180305 | ||
Picard-tools | 2.5.0, 2.9.0, 2.9.2 | ||
PICRUSt | 1.1.3, 1.1.4, 2.3.0b | ||
PICSL | 1.3 | ||
Piggy | 20171220 | ||
Pigz | 2.4 | ||
PILON | 1.22, 1.24 | ||
Pindel | 0.2.5b8 | ||
pipe-clip | 1.1.0 | ||
pipits | 1.3.6, 1.4.0 | ||
Piranha | 1.2.1 | ||
PlantTribes | 1.0.4 | ||
plasflow | 1.1 | ||
PLAST | 1.0, 2.3.2 | ||
platanus | 1.2.4 | ||
Platon | 1.6 | ||
Platypus | 0.8.1 | ||
PLEK | 1.2.2 | ||
Plink | 1.90b3.39, 2.00a2, 2.00a3LM | ||
plinkseq | 0.10 | ||
plotsr | 0.5.4 | ||
PLUMED | 2.7.3, 2021.2 | ||
pod5 | 20220621 | ||
PolyGembler | 1.0 | ||
PolyPHen | 2.2.2.r405b | ||
polyply | 1.3.0 | ||
pomoxis | 0.1.11, 0.2.5, 0.3.2 | ||
popcorn | 20211104 | ||
PopLDdecay | 3.40 | ||
popoolation | 1.2.2 | ||
Porechop | 0.2.4 | ||
Poretools | 0.6.1 | ||
portcullis | 1.2.3 | ||
PosiGene | 20171113 | ||
POV-Ray | 3.7 | ||
pplacer | 1.1.alpha19 | ||
PRANK | 170427, 20150803 | ||
Predector | 20201110 | ||
preplot | 14.0.2 | ||
Preseq | 0.0.4 | ||
PRICE | 1.2 | ||
Primer3 | 2.3.4 | ||
primus | 1.8.0 | ||
PRINSEQ | 0.20.4 | ||
PRINSEQ++ | 1.2 | ||
ProbABEL | 0.4.2, 0.4.3, 0.4.5 | ||
probalign | 1.4 | ||
Processing | 3.4 | ||
Prodigal | 2.6.2, 2.6.3 | ||
ProDy | 2.0 | ||
Program Database Toolkit | 3.20, 3.22, 3.24 | ||
PROJ | 4.9.3, 5.1.0, 8.0.1 | ||
Prokka | 1.12, 1.14.6 | ||
Proovread | 1.03rcl, 2.12, 2.13 | ||
ProSplign | 1.0.0 | ||
Protege | 5.1.0 | ||
Proteinortho | 4.26, 5.11, 5.16 | ||
ProtExcluder | 1.2 | ||
ProtHint | 2.6.0 | ||
protobuf | 2.5.0, 3.5.1 | ||
PROVEAN | 1.1.5 | ||
PRSice | 2.3.3 | ||
Pseudofinder | 1.0 | ||
PsiCLASS | 1.0.1 | ||
PSMC | 0.6.5 | ||
psRobot | 1.2 | ||
Pufferfish | 20200417 | ||
PureCLIP | 1.1.1 | ||
Purge_Dups | 1.0.1 | ||
purge_haplotigs | 1.1.2 | ||
pyani | 0.2.10 | ||
Pybedtools | 0.8.2 | ||
PyBSASeq | 20200623 | ||
PyCharm | 2018.3 | ||
pychopper | 2.5.0, 2.7.1 | ||
PyCogent | 1.9 | ||
pycoqc | 2.5.2 | ||
PyDeface | 2.0.0 | ||
pyEGA3 | 3.4.1 | ||
PyEXR | 0.3.10 | ||
Pyfaidx | 0.5.2 | ||
pyfasta | 0.5.2 | ||
pygot | 20170518 | ||
pyhdf | 0.9.0 | ||
PyHIST | 1.0 | ||
PyPHLAWD | 20180416, 20190414 | ||
Pyroms | 1.0 | ||
PyRosetta | r56324 | ||
pyrpipe | 0.0.3 | ||
Pysamstats | 1.1.2 | ||
PySLURM | 18.08.04 | ||
Python | 3.6.3, 3.6.5, 3.8 | ||
Python-core | 3.6.5, 3.7, 3.8 | ||
Python2 | 2.7.11 | ||
PyTorch | 1.11.0, 1.9.0 | ||
pytorch | 1.7.1, 1.8.1, 1.9.0 | ||
PyVCF | 0.6.0, 0.6.8 | ||
PyVista | 0.26.1 | ||
pyweka | 0.3.18 | ||
QAPA | 1.3.1 | ||
qcat | 1.1.0 | ||
qctool | 2.0.1 | ||
QD | 2.3.22 | ||
QDD | 3.1.2 | ||
QGIS | 2.18.0, 3.14.0 | ||
QIIME | 1.9.1 | ||
QIIME2 | 2021.11, 2021.4, 2022.8 | ||
QMCPACK | 3.4.0 | ||
QRNA | 2.0.4 | ||
QT | 4.8.3, 5.12.9, 5.15.4 | ||
QTL-seq | 2.2.2 | ||
QTLtools | 1.2, 1.3.1 | ||
Quake | 0.3 | ||
QualiMap | 2.1.2 | ||
Quantas | 1.0.4, 1.0.8, 1.0.9 | ||
quantisnp | 2 | ||
QuartetScores | 1.0.0 | ||
QUAST | 4.4, 5.0.0, 5.0.2 | ||
quickmerge | 0.3 | ||
Quickquartet | 1.0.0 | ||
QUIP | 20201029, 20210626 | ||
QuorUM | 1.0.0 | ||
R | 4.0, 4.1, 4.2 | ||
r-index | 20190711 | ||
r8s | 1.8, 1.81 | ||
RACA | 0.9.1.1 | ||
Racon | 1.3.3, 1.4.10, 1.4.13 | ||
RADICAL | 0.2 | ||
radorgminer | 0.9 | ||
RaGOO | 1.11 | ||
Ragout | 2.3 | ||
RagTag | 1.0.0, 2.0.1 | ||
rainbow | 2.0.4 | ||
Rainbowfish | 0.1.0 | ||
RAiSD | 2.8 | ||
Randfold | 2.0.1 | ||
ranger | 1.9.3 | ||
rapidsai | 21.10, 21.12, 22.04 | ||
rapidtide | 1.9.0 | ||
RAPSearch | 2.24 | ||
Rascaf | 1.0.2 | ||
RAVE | 2.1 | ||
Raven | 1.8.1 | ||
RAxML | 8.2.10, 8.2.12, 8.2.8 | ||
RAxML-NG | 0.9.0, 1.0.2, 1.1.0 | ||
razers3 | 3.5.7 | ||
rbp-maps | 0.1.4 | ||
rclone | 1.57.0, 1.58.1 | ||
Rcorrector | 1.0.4 | ||
RDKit | 2020092 | ||
rDnaTools | 0.1.3 | ||
READemption | 1.0.0 | ||
REAPR | 1.0.18 | ||
Rebaler | 0.2.0 | ||
reCOGnizer | 1.3.3 | ||
recon | 1.08 | ||
Redis | 2.8.13, 2.8.19 | ||
REDItools2 | 20200701 | ||
Redundans | 0.14a | ||
ReFrame | 3.2 | ||
regtools | 0.5.2 | ||
release | 12082021 | ||
RELION | 3.0.2, 3.0b, 3.1.0 | ||
RelocaTE2 | 2.0.1 | ||
REMORA | 1.8.2, 1.8.3, 1.8.5 | ||
REPdenovo | 20170222 | ||
RepeatAnalysis | 0.10.0, 0.12.2 | ||
RepeatAnalysisTools | 20210506 | ||
RepeatExplorer | 20150506, 20180517 | ||
RepeatMasker | 4.0.5, 4.0.9, 4.1.1 | ||
RepeatModeler | 1.0.8, 2.0 | ||
repeatscout | 1.0.5 | ||
RepeatSeq | 0.8.2 | ||
reptile | 1.1 | ||
ResFinder | 4.0 | ||
Resistome | 20170111 | ||
RevBayes | 1.0.7, 1.0.9, 1.1.1 | ||
RFMIX | 2.03 | ||
RGAugury | 20220107 | ||
RGI | 4.2.2, 5.1.1 | ||
RGIS | 20180211, 20180814 | ||
RHash | 1.3.3 | ||
RiboCode | 1.2.11 | ||
riboPicker | 0.4.3 | ||
RiboTaper | 1.3.1a | ||
RIGERJ | 2.0.2 | ||
rMATS turbo | 4.1.2 | ||
rmats2sashimiplot | 2.0.3, 2.0.4 | ||
Rmpi | 0.6.9 | ||
RNAFramework | 2.7.2 | ||
RNAhybrid | 2.1.1 | ||
RNAmmer | 1.2 | ||
rnaQUAST | 1.5.1 | ||
RNAsalsa | 0.8.1 | ||
rnaseqlib | 20150721 | ||
RNAstructure | 6.3 | ||
Roary | 3.12.0, 3.4.1 | ||
ROOT | 5.34.17, 6.0, 6.06.02 | ||
ROOTPy | 20160323 | ||
Rosetta | 2014wk4, 2019.35.60890 | ||
RoseTTAFold | 1.0.0 | ||
rrnaselector | 1.0 | ||
RSEG | 0.4.8 | ||
RSEM | 1.2.31, 1.2.7, 1.3.3 | ||
RSeQC | 2.6.4, 3.0.0 | ||
RStudio | 1.4, 2021.09.0, 2022.02.3 | ||
RTGTools | 3.7.1 | ||
Ruby | 2.5.1 | ||
Rust | 1.48.0, 1.52.1, 1.62.1 | ||
rvtests | 2.1.0 | ||
S.A.G.E | 6.4.2 | ||
Sabre | 1.0 | ||
saffrontree | 0.1.2 | ||
Sailfish | 0.6.3 | ||
Salmon | 1.1.0, 1.5.2, 1.8.0 | ||
SALSA | 20171009, 20191001 | ||
Sambamba | 0.6.3, 0.6.6, 0.6.9 | ||
samblaster | 0.1.14, 0.1.24 | ||
sampledock | 0.5.1 | ||
SAMStat | 1.08 | ||
Samtools | 1.7, 1.8, 1.9 | ||
SAS | 9.3, 9.4 | ||
Sate | 2.2.7 | ||
Satsuma | 3.0 | ||
Satsuma2 | 20161123, 3.1 | ||
sc-im | 0.8.2 | ||
Scala | 2.11.5, 3.0.1 | ||
Scalablast | 2.4.53 | ||
ScaLAPACK | 2.0.2, 2.1.0 | ||
scallop | 0.10.5 | ||
Scalpel | 0.1.1, 0.5.3 | ||
Schrodinger Suite | 2019-3, 2020-4, 2021-2 | ||
Scipion | 1.2 | ||
SCIrun | 5.0.Z | ||
Scoary | 1.6.16 | ||
Scons | 2.5.1, 3.1.2 | ||
SCOP | 20180311 | ||
Scrappie | 1.4.2 | ||
SCRATCH-1D | 1.0, 2.0 | ||
Screen | 4.8.0 | ||
SCRIPTURE | 20101211 | ||
Scythe | 0.991 | ||
sdsl | 2.1.1 | ||
SE-MEI | 0.1.0 | ||
SeCaPr | 1.1.12, 2.0.2, 2.1.1 | ||
Segemehl | 0.1.9, 0.3.4 | ||
segment-liftover | 20211021 | ||
SEPP | 20160614 | ||
Seq-Gen | 1.3.3 | ||
seq_crumbs | 20150120 | ||
SeqKit | 0.10.2, 0.8.0, 2.0.0 | ||
seqmagick | 0.8.4 | ||
SeqMap | 1.0.13 | ||
SEQPower | 1.1.1 | ||
SeqPrep | 0.5, 1.1 | ||
seqscreen | 3.3 | ||
seqtk | 1.3, 20140729 | ||
SEQuel | 1.0.1 | ||
SequelQC | 1.1.0 | ||
seqwish | 0.7, 20190509 | ||
SeqyClean | 1.8.10 | ||
SeSiMCMC | 4.36 | ||
SExtractor | 2.19.5 | ||
SHAPE-MaP | 1.2 | ||
SHAPEIT | 2.12, 2.5 | ||
SHAPEIT4 | 4.2.2 | ||
ShapeMapper | 2.1.3, 2.1.5 | ||
SHARCGS | 1.2.11 | ||
Shasta | 0.1.0 | ||
SHEsisPlus | 1.0, 1.01 | ||
shogun | 6.1.3 | ||
Shortbred | 0.9.4 | ||
shovill | 1.1.0 | ||
SHRiMP | 2.2.3 | ||
shustring | 2.6 | ||
SibeliaZ | 1.2.2, 1.2.3, 1.2.4 | ||
SICER | 1.1 | ||
Sickle | 1.200, 1.33 | ||
Siesta | 3.2, 4.1b2, 4.1b3 | ||
SIFT | 4.0.3b | ||
SIGffRid | 1.1 | ||
SignalP | 4.1c, 5.0b | ||
SiLiX | 1.2.11, 1.3.0 | ||
silo | 4.7 | ||
sim4 | 20121010 | ||
Sim4Life | 7.0.1 | ||
Simka | 1.5.3 | ||
SimNIBS | 3.2.1 | ||
SimSeq | 4.12.2011 | ||
Simulia | 2019 | ||
SInC | 20140120 | ||
sine_scan | 1.1.1 | ||
Singularity | 3.7.4 | ||
SIPeS | 2.0 | ||
sisl | 0.8.3 | ||
skmer | 3.2.1 | ||
Slamdunk | 0.4.1, 0.4.2 | ||
SLAW | 20211217 | ||
Slicer | 4.13.0, 4.3.1, 5.0.3 | ||
slow5tools | 0.5.1 | ||
slurm-drmaa | 1.1.2, 1.1.3 | ||
smalt | 0.7.6 | ||
SMARTdenovo | 20180219 | ||
smartie-sv | 20180308 | ||
SMC++ | 1.15.4 | ||
Smetana | 1.1.0 | ||
SMR | 1.03 | ||
SMRT-SV | 2.0.0 | ||
SMS | 1.7 | ||
Smudgeplot | 0.2.4 | ||
Snakemake | 6.4.1, 7.5.0 | ||
SNAP | 0.15.4, 2.0.0, 20100728 | ||
SNAPE-pooled | 20130407 | ||
SNeP | 1.1 | ||
Sniffles | 1.0.11, 1.0.6, 1.0.8 | ||
Sniffles2 | 2.0.6 | ||
Snippy | 20160419, 4.6.0 | ||
SNP-Pipeline | 1.0.1 | ||
SNP-sites | 2.0.3 | ||
snp2hla | 1.0.3 | ||
SnpEff | 4.3r, 4.3t, 5.0 | ||
snpflip | 20190515 | ||
SNPGenie | 20190620 | ||
SNPhylo | 20140701 | ||
SNPsplit | 0.5.0 | ||
SNPTEST | 2.5.2 | ||
SOAPaligner | 2.21 | ||
SOAPdenovo | 1.05, 2.04 | ||
SOAPdenovo-Trans | 1.01, 1.03 | ||
SOAPec | 2.03 | ||
SOAPnuke | 2.1.0 | ||
SOAPsplice | 1.10 | ||
SODA | 20200930 | ||
SOLAR | 8.4.2 | ||
SomaticSeq | 3.6.2 | ||
SortaDate | 20190705 | ||
SortMeRNA | 2.1, 4.0 | ||
SourceTracker2 | 2.0.1 | ||
Sourmash | 2.0.1 | ||
SoX | 14.4.2 | ||
SpaceRanger | 1.3.1 | ||
SPAdes | 3.15.3, 3.7.1, 3.8.0 | ||
SparCC | 201608 | ||
Spark | 2.2.0, 3.1.1 | ||
sparsehash | 2.0.3 | ||
SPARTA+ | 2.60 | ||
Spec2nii | 0.3.4 | ||
SpeedSeq | 0.1.2 | ||
Spidey | 20150922 | ||
SpinalCordToolbox | 5.4 | ||
SplAdder | 2.4.2 | ||
SpliceGrapher | 0.2.5 | ||
SpliceTrap | 0.90.5 | ||
SPM | 12b, 8, 8r5236 | ||
spruceup | 2019.2.3 | ||
Sputnik | 1.0 | ||
spyder | 4.1.4, 5.1.1, 5.3.2 | ||
SQANTI | 1.2 | ||
SQANTI2 | 5.0 | ||
SQANTI3 | 0.1, 1.6, 4.2 | ||
SQL Developer | 4.1.2 | ||
SQLite | 3.33.0, 3.8.8.2 | ||
SqueezeMeta | 1.4.0, 1.5.2 | ||
squigglekit | 1.0.0 | ||
squigglenet | 1.0 | ||
SRA | 2.10.9, 3.0.0 | ||
sra-human-scrubber | 1.1 | ||
SRAssembler | 1.0.0 | ||
SSM | 20210511 | ||
SSPACE | 2.0, 3.0 | ||
ssr_pipeline | 0.951 | ||
Stacks | 2.53, 2.55, 20190403 | ||
Staden | 1.14.6 | ||
Stampy | 1.0.31 | ||
staphb-toolkit | 1.2.0, 1.3.10 | ||
STAR | 2.7.5c, 2.7.6a, 2.7.9a | ||
STAR-CCM+ | 14.04.011, 15.02.009, 8.06 | ||
STAR-Fusion | 1.1.0, 1.3.1, 1.9.1 | ||
starseqr | 0.6.7 | ||
Stata | 10.1, 13 | ||
stringMLST | 0.4 | ||
Stringtie | 1.3.4d, 2.0.4, 2.1.3b | ||
Structure | 2.3.3, 2.3.4 | ||
Structure_threader | 1.3.10 | ||
stylegan3 | 20211028 | ||
SU2 | 7.0.6 | ||
Subread | 1.6.2, 2.0.0, 2.0.3 | ||
Subversion | 1.9.7 | ||
SUMO | 1.13.0, 1.2.0, 1.9.2 | ||
SUNDIALS | 2.3.0, 2.5.0, 3.0.0 | ||
supercell | 20170602 | ||
SuperCRUNCH | 1.2.1 | ||
Supernova | 1.2.1, 2.0.0, 2.1.1 | ||
SUPPA | 2.3 | ||
Survival_Kit | 6.12 | ||
SURVIVOR | 1.0.6 | ||
SVDetect | 0.8b | ||
svim | 1.4.2 | ||
svim-asm | 1.0.2 | ||
swarm | 1.2.11 | ||
Sweed | 3.3.2 | ||
SWIG | 2.0.9, 3.0.12, 3.0.8 | ||
SWSC-EN | 1.0.0 | ||
Synima | 20210908 | ||
syri | 1.5.4 | ||
TACO | 0.7.3 | ||
Taiyaki | 5.0.1 | ||
talesf | 20160814 | ||
Tandem-Genotypes | 1.4.0 | ||
Tantan | 13 | ||
Tapestri | 2.0.1 | ||
tapir | 20160825 | ||
TAPIS | 1.2.1 | ||
TASSEL | 5.0, 5.2.20, 5.2.29 | ||
TAU | 2.23, 2.26, 2.26.3 | ||
Tax4Fun | 0.3.1 | ||
taxMaps | 0.1 | ||
TaxonKit | 0.9.0 | ||
Taxtastic | 0.5.7, 0.9.1 | ||
tbb | 2017_20161128 | ||
tcllib | 1.18 | ||
tcoffee | 10.00.r1613, 9.03.r1318 | ||
TDNAscan | 20210304 | ||
Tecplot 360 EX | 2015R1 | ||
tellseq | 1.0.0 | ||
TEMP | 20170731 | ||
TEMP2 | 0.1.4 | ||
TensorFlow | 2.6.0, 2.7.0, 2.8.0 | ||
TESS | 2.3.1 | ||
Test | 1.0 | ||
TetGen | 1.5.0 | ||
TEToolkit | 1.5.1 | ||
TEtools | 20180213 | ||
Texlive | 20191127, 2020 | ||
TGICL | 2.1 | ||
TGSGapCloser | 1.0.3 | ||
the_silver_searcher | 2.2.0 | ||
Theano | 1.0.4 | ||
Themisto | 0.2.0, 1.1.0 | ||
Tiara | 1.0.2 | ||
tiff | 3.8.0, 4.0.10 | ||
Tigmint | 1.1.2 | ||
Tmux | 2.9, 3.1 | ||
TNTBLAST | 2.04 | ||
ToFU2 | v17 | ||
toil | 3.3.0, 3.3.3 | ||
Tombo | 1.4, 1.5, 1.5.1 | ||
Tophat | 2.1.0, 2.1.1, 2.1.2 | ||
torch-geometric | 1.3.2 | ||
TotalView | 8.12 | ||
TPMcalculator | 0.0.3 | ||
TPP | 4.7.0, 4.7.1, 5.0.0 | ||
TraCeR | 20160519 | ||
TrackTools | 2011 | ||
TrackVis/DTK | 0.5.2.2, 0.6.0.1 | ||
Tracula | 5.3.2014_05_26 | ||
traitRate | 1.1 | ||
Trans-ABySS | 2.0.1 | ||
TransDecoder | 5.3.0, 5.4.0, 5.5.0 | ||
TRANSIT | 2.5.2, 3.2.3 | ||
Transrate | 1.0.1 | ||
TransVar | 2.3.3 | ||
TreeBreaker | 20160621 | ||
TreeMix | 1.12 | ||
treePL | 20150305 | ||
TREEPUZZLE | 5.3 | ||
TreeShrink | 1.3.1, 1.3.2 | ||
TreeTime | 0.7.5, 0.8.1 | ||
trelis | 16.3 | ||
TRF | 4.04, 4.09.1 | ||
Trilinos | 12.12.1, 12.18.1, 12.6.4 | ||
Trim Galore | 0.4.4, 0.5.0, 0.6.5 | ||
trim_isoseq_polya | 0.0.3 | ||
trimAl | 1.2 | ||
TriMetAss | 1.1 | ||
Trimmomatic | 0.33, 0.36, 0.39 | ||
Trinity | r20130225, r20131110, r20140413 | ||
Trinotate | 3.0.1, 3.2.0 | ||
triobinning | 0.2.3 | ||
TRIPLEC | 1.0 | ||
TRITONSERVER | 21.08 | ||
tRNAscan-Se | 1.23 | ||
TRUST4 | 1.0.2b | ||
Trycycler | 0.4.2 | ||
TURBOMOLE | 7.4.1 | ||
TWINSCAN | 4.1.2 | ||
Ubuntu | 20.04, 22.04 | ||
UCSC | 20200320, 20210803 | ||
ucsc-fafiltern | 377 | ||
ucsc-maskoutfa | 377 | ||
UCX | 1.11.2, 1.9.0 | ||
UDUNITS | 2.2.17 | ||
ufraw | 0.22 | ||
ugtm | 1.1.6 | ||
UKFractography | 20200127 | ||
umi-tools | 0.5.5 | ||
UNAFold | 3.8 | ||
Unanimity | 20171108, 3.4.1 | ||
UNCALLED | 2.2 | ||
Unicycler | 0.4.8 | ||
Unrar | 0.0.1, 4.20 | ||
uproc | 1.2.0 | ||
uropa | 4.0.2 | ||
USEARCH | 9.0.2132, 9.1.13, 9.2.64 | ||
UShER | 0.1.4, 0.4.1, 0.5.2 | ||
V-Phaser | 02112013 | ||
v-pipe | 2.0.0 | ||
VAIR | 0.7.0 | ||
Valgrind | 3.11.0, 3.15.0, 3.8.1 | ||
Valouev | 20160325 | ||
vamb | 3.0.2 | ||
VAMPIR | 9.1 | ||
VarDictJava | 1.6.0, 20160521, 20170531 | ||
varnorm | 0.21 | ||
VarScan | 2.3.6 | ||
VarSim | 0.8.4, 0.8.6 | ||
VarSimLab | 20180220, 20180921 | ||
vasp | 5.4.4, 6.1.0, 6.2.0 | ||
vaspkit | 1.2.5 | ||
VAST-TOOLS | 2.5.1, 20150506 | ||
VCF-kit | 0.2.6 | ||
vcf-validator | 0.6 | ||
vcfanno | 0.2.8, 0.3.3 | ||
vcflib | 1.0.1 | ||
vcftools | 0.1.15, 0.1.16, 0.1.9 | ||
vcontact | 20190512 | ||
VDJtools | 1.1.7, 1.2.1 | ||
Velvet | 1.2.10, 1.2.10-long | ||
VEP | 83, 88.8, 92 | ||
Vermouth-martinize | 0.7.2 | ||
VeryFastTree | 3.0.1 | ||
vg | 1.33.0, 1.38.0, 1.39.0 | ||
vibrant | 1.2.0 | ||
ViennaRNA | 2.2.6, 2.4.18 | ||
ViewBS | 0.1.10, 0.1.9 | ||
Vim | 8.1.1566, 8.2.2465 | ||
viralmsa | 1.1.10, 1.1.12 | ||
VirSIeve | 20210406 | ||
VirtualCell | 7.1 | ||
VIRULIGN | 1.0.2 | ||
VirusDetect | 1.7 | ||
VirusFinder | 2.0 | ||
visit | 2.13.3, 3.0.1, 3.1.4 | ||
VISPR | 0.4.14 | ||
VMD | 1.9.1, 1.9.3 | ||
vscode | 1.38.1, 1.65.2 | ||
VSearch | 20151022, 20161209-2.3.4 | ||
vt | 0.57721, 20140903, 20160129 | ||
VTC | 0.9.3 | ||
VTK | 8.2.0, 9.0.3, 9.1.0 | ||
w2rap-contigger | 20161124 | ||
Wannier90 | 1.2, 2.1.0 | ||
WarpedLMM | 0.21 | ||
WaveGAN | 20190829 | ||
WDSSII | 5 | ||
WebLogo | 2.8.2, 3.3, 3.5.0 | ||
Weka | 3.8, 3.8.5 | ||
Wengan | 0.2 | ||
wgd | 1.1.1 | ||
WGS Assembler | 8.3rc1.r4638, 8.3rc2 | ||
Wgsim | 0.3.1-r13 | ||
WHAMM | 0.14a | ||
WhatsHap | 1.1 | ||
whiteboxtools | 1.5.0 | ||
Wine | 4.0.0, 7.0.0 | ||
Wise | 2.2.0, 2.4.1 | ||
WIsH | 1.0 | ||
WoLFPSort | 0.2 | ||
WOMBAT | 20180118 | ||
workbench | 4.1.1 | ||
wtdbg | 2.1, 2.4, 2.5 | ||
WU BLAST | 2.0 | ||
Wub | 0.2.0, 0.4.0 | ||
xander | 20151222 | ||
Xapian | 1.4.4 | ||
XCrySDen | 1.5.60 | ||
Xerces | 3.1.4 | ||
xesmf | 0.6.2 | ||
xpclr | 1.0, 1.1.1 | ||
Xterm | 1.1 | ||
XWAS | 3.0 | ||
XY-Meta | 20200413 | ||
XZ | 5.2.2 | ||
YAGO | 4 | ||
YAHA | 0.1.82 | ||
YAK | 0.1 | ||
YASM | 1.3.0 | ||
YASRA | 2.33 | ||
yolov4_darknet | 4-pre | ||
yolov5 | 4.0 | ||
Zagros | 1.0.0 | ||
ZEO++ | 0.2.2 | ||
zorro | 2.2 | ||
Zstd | 1.5.0 | ||
ZUMIS | 2.6.0 | [{{{website}}}}}] | {{{categories}}}}} |