IRAP
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of existing tools for mapping reads, quantifying expression and testing for differential expression. Depending upon the application, iRAP can be used to quantify expression at the gene, exon or transcript level.
Required Modules
Serial
- irap
System Variables
- HPC_IRAP_DIR - installation directory
Additional Information
To run iRAP use the following commands
module load irap launch_irap <executable> <arguments>
See iRAP wiki for the instructions: https://github.com/nunofonseca/irap/wiki