NextGenMap
Revision as of 21:23, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analyzing large-scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
Required Modules
Serial
- gcc/5.2.0
- nextgenmap
System Variables
- HPC_NEXTGENMAP_DIR - installation directory
- HPC_NEXTGENMAP_BIN - executable directory
Citation
If you publish research that uses nextgenmap you have to cite it as follows: