Bsmap
Revision as of 02:47, 28 October 2014 by Moskalenko (talk | contribs)
Description
BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated Cytosines into Uracils (sequenced as Thymine) and leave methylated Cytosines unchanged, hence provides a way to study DNA cytosine methylation at single nucleotide resolution. BSMAP aligns the Ts in the reads to both Cs and Ts in the reference.
Required Modules
Serial
- bsmap
System Variables
- HPC_{{#uppercase:bsmap}}_DIR - installation directory
- HPC_{{#uppercase:bsmap}}_DOC - documentation directory
Citation
If you publish research that uses bsmap you have to cite it as follows:
Xi Y, Li W: BSMAP: whole genome Bisulfite Sequence MAPping program. BMC Bioinformatics (2009) 10:232.