RADICAL: Difference between revisions
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The radical/0.2 code is preset for using 2 RAxML threads, so the batch job resource request must be in the form of "nodes=1:ppn=2". There is no PAUP option. | |||
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Revision as of 20:11, 28 November 2012
Description
RADICAL stands for Random Addition Concatenation Analysis. It concatenates randomly selected gene partitions and builds phylogenetic trees (MP with PAUP*/ML with RAxML) to examine tree-to-tree agreement of the concatenation path. Also calculates ML support per node and partition. See Narechania et al. (2011 Genome Biol Evol).
Required Modules
Serial
- radical
System Variables
- HPC_{{#uppercase:radical}}_DIR
Additional Information
The radical/0.2 code is preset for using 2 RAxML threads, so the batch job resource request must be in the form of "nodes=1:ppn=2". There is no PAUP option.