Difference between revisions of "Cutadapt"
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* HPC_CUTADAPT_BIN - executable directory | * HPC_CUTADAPT_BIN - executable directory | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
Revision as of 18:09, 10 August 2012
Description
cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.
Required Modules
Serial
- cutadapt
System Variables
- HPC_{{#uppercase:cutadapt}}_DIR - installation directory
- HPC_CUTADAPT_BIN - executable directory