Difference between revisions of "ABySS"

Revision as of 17:51, 10 August 2012

Description

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Required Modules

modules documentation

Serial

abyss

Parallel (MPI)

intel
openmpi
abyss

System Variables

HPC_{{#uppercase:abyss}}_DIR - installation directory

@@ Line 2: / Line 2: @@
 __NOEDITSECTION__
 [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
-<!-- ########  Template Configuration ######## -->
-<!--Edit definitions of the variables used in template calls
-Required variables:
-app - lowercase name of the application e.g. "amber"
-url - url of the software page (project, company product, etc) - e.g. "http://ambermd.org/"
-Optional variables:
-INTEL - Version of the Intel Compiler e.g. "11.1"
-MPI - MPI Implementation and version e.g. "openmpi/1.3.4"
--->
 {|
 <!--Main settings - REQUIRED-->