Difference between revisions of "CisGenome"
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Moskalenko (talk | contribs) m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==") |
Moskalenko (talk | contribs) m (Text replace - "==Available versions== (.*)+ <!-- -->" to "<!--Modules-->") |
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An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis. | An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis. | ||
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{{#if: {{#var: mod}}|==Execution Environment and Modules== | {{#if: {{#var: mod}}|==Execution Environment and Modules== | ||
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | ||
Revision as of 02:41, 10 August 2012
Description
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.
Execution Environment and Modules
To use cisgenome with the environment modules system at HPC the following commands are available:
Get module information for cisgenome:
$module spider cisgenome
Load the default application module:
$module load cisgenome
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CISGENOME_DIR - directory where cisgenome is located.
- HPC_CISGENOME_BIN - executable directory