Bismark: Difference between revisions
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Moskalenko (talk | contribs) m Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "" |
Moskalenko (talk | contribs) m Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==" |
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* 0.7.4 (EL6) | * 0.7.4 (EL6) | ||
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{{#if: {{#var: mod}}|== | {{#if: {{#var: mod}}|==Execution Environment and Modules== | ||
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | ||
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | <!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | ||
Revision as of 02:02, 10 August 2012
Description
Bismark is a bisulfite read mapper and methylation caller.
Available versions
- 0.7.4 (EL6)
Execution Environment and Modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.