BFAST: Difference between revisions
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Moskalenko (talk | contribs) m Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "" |
Moskalenko (talk | contribs) m Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==" |
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* HPC_BFAST_BIN - executable directory | * HPC_BFAST_BIN - executable directory | ||
Revision as of 02:02, 10 August 2012
Description
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
Available versions
- 0.7.0a
Execution Environment and Modules
To use bfast with the environment modules system at HPC the following commands are available:
Get module information for bfast:
$module spider bfast
Load the default application module:
$module load bfast
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BFAST_DIR - directory where bfast is located.
- HPC_BFAST_BIN - executable directory
- HPC_BFAST_DOC - documentation directory