Difference between revisions of "Trinity"
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{{App_Location|app={{#var:app}}|{{#var:ver}}}} | {{App_Location|app={{#var:app}}|{{#var:ver}}}} | ||
==Available versions== | ==Available versions== | ||
| − | * r20110820 | + | * r20110820, r20120125, r20120317 (EL5) |
| − | + | * trinity/r20120608 (default), both EL5 and EL6. | |
| − | * | ||
<!-- --> | <!-- --> | ||
{{#if: {{#var: mod}}|==Using application with environment modules system== | {{#if: {{#var: mod}}|==Using application with environment modules system== | ||
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}} | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
| − | To run Trinity after you load the module use the "Trinity.pl" perl script, or run_Trinity.sh shell script, which is particularly useful | + | To run Trinity after you load the module use the "Trinity.pl" perl script, or run_Trinity.sh shell script, which is particularly useful as the optional ALLPATHS-LG software is enabled at UF HPC. |
|}} | |}} | ||
Revision as of 20:23, 5 July 2012
Description
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Trinity contains three applications - Inchworm, Chrysalis, and Butterfly.
Template:App Location
Available versions
- r20110820, r20120125, r20120317 (EL5)
- trinity/r20120608 (default), both EL5 and EL6.
Using application with environment modules system
To use trinity with the environment modules system at HPC the following commands are available:
Get module information for trinity:
$module spider trinity
Load the default application module:
$module load trinity
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_TRINITY_DIR - directory where trinity is located.
How To Run
To run Trinity after you load the module use the "Trinity.pl" perl script, or run_Trinity.sh shell script, which is particularly useful as the optional ALLPATHS-LG software is enabled at UF HPC.