Tuxedo: Difference between revisions

Revision as of 13:22, 29 March 2012

Tuxedo is a combination of three different programs:

See the respective program page for usage information or run

module spider program

where program is bowtie, tophat or cufflinks.

These programs are all installed in:

/apps/tuxedo/bowtie
/apps/tuxedo/tophat
/apps/tuxedo/cufflinks

See respective program wiki pages for more details.

@@ Line 4: / Line 4: @@
 * [[Bowtie]] - [http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website]
-* tophat - [http://tophat.cbcb.umd.edu/ Tophat Website]
+* [[Tophat]] - [http://tophat.cbcb.umd.edu/ Tophat Website]
 * [[Cufflinks]] - [http://cufflinks.cbcb.umd.edu/ Cufflinks Website]
@@ Line 19: / Line 19: @@
   /apps/tuxedo/cufflinks
-==Libraries==
+See respective program wiki pages for more details.
-Samtools also needs to be installed on the system for tophat to work. They are currently installed here:
- /apps/tuxedo/samtools-0.1.16